Evidence map›Paper›PMID 33264441›Full record

ArticleThe EMBO journal2021

Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation.

Sandi Paulišić, Wenting Qin, Harshul Arora Verasztó, Christiane Then, Benjamin Alary, Fabien Nogue, Miltos Tsiantis, Michael Hothorn, Jaime F Martínez-García

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
8.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
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  8. Shade-induced ROS/NO reinforce COP1-mediated diffuse cell growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  12. Comprehensive Analysis ofInternational journal of molecular sciences · 2022
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  14. International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 4 countries.

Sandi PaulišićCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Cerdanyola del Vallès, Campus UAB, Barcelona, Spain.ORCID 0000-0003-4696-5134
Wenting QinCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Cerdanyola del Vallès, Campus UAB, Barcelona, Spain.ORCID 0000-0002-7221-2067
Harshul Arora VerasztóStructural Plant Biology Laboratory, Section of Biology, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-0702-6022
Christiane ThenCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Cerdanyola del Vallès, Campus UAB, Barcelona, Spain.ORCID 0000-0001-8867-7080
Benjamin AlaryCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Cerdanyola del Vallès, Campus UAB, Barcelona, Spain.ORCID 0000-0002-7845-0058
Fabien NogueInstitut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles, France.ORCID 0000-0003-0619-4638
Miltos TsiantisDepartment of Comparative Development and Genetics, Max Planck Institute from Plant Breeding Research, Cologne, Germany.ORCID 0000-0001-7150-1855
Michael HothornStructural Plant Biology Laboratory, Section of Biology, Department of Botany and Plant Biology, University of Geneva, Geneva, Switzerland.ORCID 0000-0002-3597-5698
Jaime F Martínez-GarcíaCentre for Research in Agricultural Genomics (CRAG), CSIC-IRTA-UAB-UB, Cerdanyola del Vallès, Campus UAB, Barcelona, Spain.ORCID 0000-0003-1516-0341
Center for Research in Agricultural Genomics · ESUniversity of Geneva · CHCentre National de la Recherche Scientifique · FRInstitució Catalana de Recerca i Estudis Avançats · ESMax Planck Institute for Plant Breeding Research · DE

Funding

Biotechnology and Biological Sciences Research Council BB/H006974/1Centro de Excelencia Severo Ochoa 2016-2019 SEV-2015-0533CERCA ProgrammeChinese Government ScholarshipEuropean Commission (EC)Generalitat de Catalunya (Government of Catalonia)Government of Catalonia | Agència de Gestió d'Ajuts Universitaris i de Recerca (AGAUR) 2017-SGR1211Howard Hughes Medical Institute (HHMI)Laboratoire Systèmes et Ingénierie de Paris-Saclay (Labex LaSIPS) ANR-10-LABX-0040-SPSMax Planck SocietyMinisterio de Economía, Industria y Competitividad, Gobierno de España (MINECO) BIO2017-85316-RXarba
6 · The paper itself

Abstract

Shade caused by the proximity of neighboring vegetation triggers a set of acclimation responses to either avoid or tolerate shade. Comparative analyses between the shade-avoider Arabidopsis thaliana and the shade-tolerant Cardamine hirsuta revealed a role for the atypical basic-helix-loop-helix LONG HYPOCOTYL IN FR 1 (HFR1) in maintaining the shade tolerance in C. hirsuta, inhibiting hypocotyl elongation in shade and constraining expression profile of shade-induced genes. We showed that C. hirsuta HFR1 protein is more stable than its A. thaliana counterpart, likely due to its lower binding affinity to CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), contributing to enhance its biological activity. The enhanced HFR1 total activity is accompanied by an attenuated PHYTOCHROME INTERACTING FACTOR (PIF) activity in C. hirsuta. As a result, the PIF-HFR1 module is differently balanced, causing a reduced PIF activity and attenuating other PIF-mediated responses such as warm temperature-induced hypocotyl elongation (thermomorphogenesis) and dark-induced senescence. By this mechanism and that of the already-known of phytochrome A photoreceptor, plants might ensure to properly adapt and thrive in habitats with disparate light amounts.

Indexed as

AcclimatizationArabidopsisArabidopsis ProteinsBase SequenceBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsGene Expression Regulation, PlantHypocotylPhytochromeTranscription, GeneticArabidopsis ProteinsAt1g02340 protein, ArabidopsisBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsPhytochromePIF7 protein, ArabidopsisCardamine hirsutaHFR1PIFsshade avoidanceshade tolerance

Identifiers

PMID33264441
PMCPMC7780144
OpenAlexW3109838316

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.