Evidence map›Paper›PMID 33264283›Full record

ArticlePloS one2020

Adaptability and stability analyses of plants using random regression models.

Michel Henriques de Souza, José Domingos Pereira Júnior, Skarlet De Marco Steckling, Jussara Mencalha, Fabíola Dos Santos Dias, João Romero do Amaral Santos de Carvalho Rocha, Pedro Crescêncio Souza Carneiro, José Eustáquio de Souza Carneiro

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Partitioning the forms of genotype-by-environment interaction in the reaction norm analysis of stability.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Michel Henriques de SouzaDepartamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.ORCID 0000-0002-0191-2461
José Domingos Pereira JúniorDepartamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
Skarlet De Marco StecklingDepartamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
Jussara MencalhaDepartamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
Fabíola Dos Santos DiasDepartamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
João Romero do Amaral Santos de Carvalho RochaDepartamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
Pedro Crescêncio Souza CarneiroDepartamento de Biologia Geral, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.
José Eustáquio de Souza CarneiroDepartamento de Agronomia, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evaluation of cultivars using multi-environment trials (MET) is an important step in plant breeding programs. One of the objectives of these evaluations is to understand the genotype by environment interaction (GEI). A method of determining the effect of GEI on the performance of cultivars is based on studies of adaptability and stability. Initial studies were based on linear regression; however, these methodologies have limitations, mainly in trials with genetic or statistical unbalanced, heterogeneity of residual variances, and genetic covariance. An alternative would be the use of random regression models (RRM), in which the behavior of the genotypes is characterized as a reaction norm using longitudinal data or repeated measurements and information regarding a covariance function. The objective of this work was the application of RRM in the study of the behavior of common bean cultivars using a MET, based on Legendre polynomials and genotype-ideotype distances. We used a set of 13 trials, which were classified as unfavorable or favorable environments. The results revealed that RRM enables the prediction of the genotypic values of cultivars in environments where they were not evaluated with high accuracy values, thereby circumventing the unbalanced of the experiments. From these values, it was possible to measure the genotypic adaptability according to ideotypes, according to their reaction norms. In addition, the stability of the cultivars can be interpreted as variation in the behavior of the ideotype. The use of ideotypes based on real data allowed a better comparison of the performance of cultivars across environments. The use of RRM in plant breeding is a good alternative to understand the behavior of cultivars in a MET, especially when we want to quantify the adaptability and stability of genotypes.

Indexed as

Gene-Environment InteractionModels, GeneticAdaptation, PhysiologicalAlgorithmsAltitudeBrazilGenomic InstabilityGenotypeLikelihood FunctionsPhaseolusPlant BreedingPlantsProbabilityRandom AllocationRegression AnalysisSeasons

Identifiers

PMID33264283
PMCPMC7710123

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.