Evidence map›Paper›PMID 33263396›Full record

ArticleJournal of proteome research2021

Leveraging the Entirety of the Protein Data Bank to Enable Improved Structure Prediction Based on Cross-Link Data.

Andrew Keller, Juan D Chavez, Xiaoting Tang, James E Bruce

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Green Synthesis of Zinc Oxide Nanoparticles fromInternational journal of nanomedicine · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Andrew KellerDepartment of Genome Sciences, University of Washington, Seattle, Washington 98105, United States.
Juan D ChavezDepartment of Genome Sciences, University of Washington, Seattle, Washington 98105, United States.
Xiaoting TangDepartment of Genome Sciences, University of Washington, Seattle, Washington 98105, United States.
James E BruceDepartment of Genome Sciences, University of Washington, Seattle, Washington 98105, United States.ORCID 0000-0001-6441-6089
University of Washington · US

Funding

Quantitation of protein interactions in cancer cellsR01GM086688 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2009 to 2019
$4.2M
Dynamics of the cellular interactomeR35GM136255 · NIGMS · UNIVERSITY OF WASHINGTON · PI James Edward Bruce · 2020 to 2026
$4.0M
Instrumentation Development: MS Array for Quantitative ProteomicsR01GM097112 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2011 to 2020
$2.9M
The heart failure interactomeR01HL144778 · NHLBI · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2019 to 2022
$2.7M
NHLBI NIH HHS R01 HL144778NIGMS NIH HHS R01 GM086688NIGMS NIH HHS R01 GM097112NIGMS NIH HHS R35 GM136255
6 · The paper itself

Abstract

XLinkDB is a fast-expanding public database now storing more than 100 000 distinct identified cross-linked protein residue pairs acquired by chemical cross-linking with mass spectrometry from samples of 12 species (

Indexed as

Protein Interaction MappingProteomeAnimalsCross-Linking ReagentsDatabases, ProteinMass SpectrometryMiceProtein ConformationCross-Linking ReagentsProteomechemical cross-linkingcross-link databaseinteractomicsmass spectrometryorthologuesProtein BLASTprotein complexesprotein structures

Identifiers

PMID33263396
PMCPMC7980787
OpenAlexW3107643083

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.