Evidence map›Paper›PMID 33263322›Full record

ArticleActa crystallographica. Section D, Structural biology2020

High-performance macromolecular data delivery and visualization for the web.

David Sehnal, Radka Svobodová, Karel Berka, Alexander S Rose, Stephen K Burley, Sameer Velankar, Jaroslav Koča

Erratum issuedAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. High-performance macromolecular data delivery and visualization for the web. Corrigendum.Acta crystallographica. Section D, Structural biology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

David SehnalCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic.ORCID 0000-0002-0682-3089
Radka SvobodováCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic.
Karel BerkaRegional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Šlechtitelů 241/27, 779 00 Olomouc, Czech Republic.ORCID 0000-0001-9472-2589
Alexander S RoseResearch Collaboratory for Structural Bioinformatics (RCSB), San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, San Diego, CA 92093-0743, USA.ORCID 0000-0002-0893-5551
Stephen K BurleyRCSB Protein Data Bank, Institute for Quantitative Biomedicine and Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 174 Frelinghuysen Road, Piscataway, NJ 08854-8076, USA.ORCID 0000-0002-2487-9713
Sameer VelankarProtein Data Bank in Europe (PDBe), European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, United Kingdom.ORCID 0000-0002-8439-5964
Jaroslav KočaCEITEC - Central European Institute of Technology, Masaryk University, Kamenice 753/5, 625 00 Brno, Czech Republic.ORCID 0000-0002-2780-4901

Funding

ELIXIR-CZ LM2018131European Regional Development Fund CZ.02.1.01/0.0/0.0/16_013/0001777
6 · The paper itself

Abstract

Biomacromolecular structural data make up a vital and crucial scientific resource that has grown not only in terms of its amount but also in its size and complexity. Furthermore, these data are accompanied by large and increasing amounts of experimental data. Additionally, the macromolecular data are enriched with value-added annotations describing their biological, physicochemical and structural properties. Today, the scientific community requires fast and fully interactive web visualization to exploit this complex structural information. This article provides a survey of the available cutting-edge web services that address this challenge. Specifically, it focuses on data-delivery problems, discusses the visualization of a single structure, including experimental data and annotations, and concludes with a focus on the results of molecular-dynamics simulations and the visualization of structural ensembles.

Indexed as

Computer GraphicsInternetSoftwareUser-Computer InterfaceMacromolecular SubstancesMacromolecular Substancesbrowser-baseddata deliverymacromoleculesvisualizationweb-based

Identifiers

PMID33263322
PMCPMC7709201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.