Evidence map›Paper›PMID 33263226›Full record

ArticleJournal of veterinary science2020

Complete genome and phylogenetic analysis of bovine papillomavirus type 15 in Southern Xinjiang dairy cow.

Jianjun Hu, Wanqi Zhang, Surinder Singh Chauhan, Changqing Shi, Yumeng Song, Yubing Zhao, Zhehong Wang, Long Cheng, Yingyu Zhang

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Frontiers in veterinary science · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jianjun HuCollege of Animal Science, Tarim University, Alar 843300, China. 1498108057@qq.com.ORCID https://orcid.org/0000-0003-2509-3939
Wanqi ZhangCollege of Animal Science, Tarim University, Alar 843300, China.ORCID https://orcid.org/0000-0002-1552-2595
Surinder Singh ChauhanFaculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne, Melbourne, VIC 3647, Australia. ss.chauhan@unimelb.edu.au.ORCID https://orcid.org/0000-0003-1150-379X
Changqing ShiCollege of Animal Science, Tarim University, Alar 843300, China.ORCID https://orcid.org/0000-0002-9336-9047
Yumeng SongFaculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne, Melbourne, VIC 3647, Australia.ORCID https://orcid.org/0000-0001-6781-2511
Yubing ZhaoCollege of Animal Science, Tarim University, Alar 843300, China.ORCID https://orcid.org/0000-0002-4320-1633
Zhehong WangCollege of Animal Science, Tarim University, Alar 843300, China.ORCID https://orcid.org/0000-0002-8664-9403
Long ChengFaculty of Veterinary and Agricultural Sciences, Dookie Campus, The University of Melbourne, Melbourne, VIC 3647, Australia.ORCID https://orcid.org/0000-0002-8483-0495
Yingyu ZhangCollege of Animal Science, Tarim University, Alar 843300, China.ORCID https://orcid.org/0000-0003-0520-6123
Tarim University · CNThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBovine papilloma is a neoplastic disease caused by bovine papillomaviruses (BPVs), which were recently divided into 5 genera and at least 24 genotypes.

objectivesThe complete genome sequence of BPV type 15 (BPV Aks-02), a novel putative BPV type from skin samples from infected cows in Southern Xinjiang China, was determined by collecting warty lesions, followed by DNA extraction and amplicon sequencing.

methodsDNA was analyzed initially by polymerase chain reaction (PCR) using the degenerate primers FAP59 and FAP64. The complete genome sequences of the BPV Aks-02 were amplified by PCR using the amplification primers and sequencing primers. Sequence analysis and phylogenetic analysis were performed using bio-informatic software.

resultsThe nucleotide sequence of the L1 open reading frame (ORF) of BPV Aks-02 was 75% identity to the L1 ORF of BPV-9 reference strain from GenBank. The complete genome consisted of 7,189 base pairs (G + C content of 42.50%) that encoded 5 early (E8, E7, E1, E2, and E4) and 2 late (L1 and L2) genes. The E7 protein contained a consensus CX₂CX

conclusionsThe results suggest that BPV type (BPV Aks-02) clustered with members of the

Indexed as

Genome, ViralAnimalsCattleCattle DiseasesChinaFemalePapillomavirus InfectionsPhylogenyPolymerase Chain ReactionXipapillomavirusBovine papillomavirusPhylogeneticsSequencingXipapillomavirus

Identifiers

PMID33263226
PMCPMC7710463
OpenAlexW3084468514

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.