Evidence map›Paper›PMID 33263113›Full record

ArticleHGG advances2020

Deep whole-genome sequencing of multiple proband tissues and parental blood reveals the complex genetic etiology of congenital diaphragmatic hernias.

Eric L Bogenschutz, Zac D Fox, Andrew Farrell, Julia Wynn, Barry Moore, Lan Yu, Gudrun Aspelund, Gabor Marth, Mark Yandell, Yufeng Shen and 2 more

Open access · goldAbstract read
In one paragraph

Article in HGG advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Mechanical compression causes lung hypoplasia in congenital diaphragmatic hernia with GATA4 genetic variants.American journal of physiology. Lung cellular and molecular physiology · 2026
    Article
  3. Modeling patient variants ofbioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Review
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Eric L BogenschutzDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Zac D FoxDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Andrew FarrellDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Julia WynnDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Barry MooreDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Lan YuDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Gudrun AspelundDepartment of Surgery, Columbia University Irving Medical Center, New York, NY 10032, USA.
Gabor MarthDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Mark YandellDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Yufeng ShenDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Wendy K ChungDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Gabrielle KardonDepartment of Human Genetics, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
University of Utah · USColumbia University Irving Medical Center · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR024156 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2006 to 2011
$53.0M
THE DROSOPHILA GENETICS AND RNAI CORE (THE FLY CORE)P01HD068250 · NICHD · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, WENDY K, DONAHOE, PATRICIA K · 2011 to 2022
$17.1M
TRAINING PROGRAM IN GENETICST32GM007464 · NIGMS · UNIVERSITY OF UTAH · PI GRUNWALD, DAVID J., STANFIELD, GILLIAN · 1985 to 2020
$6.1M
Identification of Novel Genes for Congenital Diaphragmatic HerniaR01HD057036 · NICHD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ASPELUND, GUDRUN, CHUNG, WENDY K · 2008 to 2012
$2.8M
Integrate cancer genomics data in geneticstudies and diagnosis of developmental disordersR01GM120609 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, YUFENG · 2017 to 2021
$1.7M
Development of the Diaphragm and Congenital Diaphragmatic Hernias (CDH)R01HD087360 · NICHD · UNIVERSITY OF UTAH · PI KARDON, GABRIELLE · 2016 to 2020
$1.6M
Genetic analysis of structural birth defects by integration of multiple diseases with epigenomic data and cancer mutationsR03HL138352 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHEN, YUFENG · 2017 to 2018
$320k
NCRR NIH HHS UL1 RR024156NHLBI NIH HHS R03 HL138352NICHD NIH HHS P01 HD068250NICHD NIH HHS R01 HD057036NICHD NIH HHS R01 HD087360NIGMS NIH HHS R01 GM120609NIGMS NIH HHS T32 GM007464
6 · The paper itself

Abstract

The diaphragm is critical for respiration and separation of the thoracic and abdominal cavities, and defects in diaphragm development are the cause of congenital diaphragmatic hernias (CDH), a common and often lethal birth defect. The genetic etiology of CDH is complex. Single-nucleotide variants (SNVs), insertions/deletions (indels), and structural variants (SVs) in more than 150 genes have been associated with CDH, although few genes are recurrently mutated in multiple individuals and mutated genes are incompletely penetrant. This suggests that multiple genetic variants in combination, other not-yet-investigated classes of variants, and/or nongenetic factors contribute to CDH etiology. However, no studies have comprehensively investigated in affected individuals the contribution of all possible classes of variants throughout the genome to CDH etiology. In our study, we used a unique cohort of four individuals with isolated CDH with samples from blood, skin, and diaphragm connective tissue and parental blood and deep whole-genome sequencing to assess germline and somatic

Identifiers

PMID33263113
PMCPMC7703690
OpenAlexW3080354035

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.