ArticleFrontiers in microbiology2020
Data-Driven Modeling for Species-Level Taxonomic Assignment From 16S rRNA: Application to Human Microbiomes.
Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Pasture diversity and regenerative management shape ruminant gut microbiome dynamics within a real multi-year farming system.Frontiers in microbiology · 2026Article
- Exploiting fuzzy weights in CNN model-based taxonomic classification of 500-bp sequence bacterial dataset.Scientific reports · 2025Article
- Metagenomic insights into microbial community alterations and co-occurrence networks in infective endocarditis.Genomics & informatics · 2025Article
- Assessing the Oral Microbiome in Women of Reproductive Age: A Narrative Review.Clinics and practice · 2025Review
- Defining the cultured and uncultured bacterial fractions in Cannabis seeds.Environmental microbiome · 2025Article
- Effects of high-dose glucocorticoids on gut microbiota in the treatment of Graves' ophthalmopathy.Microbiology spectrum · 2025Article
- Analyzing microbiome data with taxonomic misclassification using a zero-inflated Dirichlet-multinomial model.BMC bioinformatics · 2025Article
- Impact of DNA extraction techniques and sequencing approaches on microbial community profiling accuracy.Frontiers in microbiomes · 2025Article
- Novel biomarker identification for oral squamous cell carcinoma development in nonsmoker, nondrinker, and nonchewer patients using third-generation sequencing of oral microbiome.Journal of oral microbiology · 2025Article
- Research progress on the role of microbiota in the pathogenesis of gallstone disease.Frontiers in microbiology · 2025Review
- Combining 16S Sequencing and qPCR Quantification RevealsBiomolecules · 2023Article
- Article
- Probiotics and their Metabolites Reduce Oxidative Stress in Middle-Aged Mice.Current microbiology · 2022Article
- Species-Level Resolution of Female Bladder Microbiota from 16S rRNA Amplicon Sequencing.mSystems · 2021Article
- Are Faecal Microbiota Analyses on Species-Level Suitable Clinical Biomarkers? A Pilot Study in Subjects with Morbid Obesity.Microorganisms · 2021Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
With the emergence of next-generation sequencing (NGS) technology, there have been a large number of metagenomic studies that estimated the bacterial composition via 16S ribosomal RNA (16S rRNA) amplicon sequencing. In particular, subsets of the hypervariable regions in 16S rRNA, such as V1-V2 and V3-V4, are targeted using high-throughput sequencing. The sequences from different taxa are assigned to a specific taxon based on the sequence homology. Since such sequences are highly homologous or identical between species in the same genus, it is challenging to determine the exact species using 16S rRNA sequences only. Therefore, in this study,
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