Evidence map›Paper›PMID 33257873›Full record

ArticleNature chemical biology2021

Cryptic phosphorylation in nucleoside natural product biosynthesis.

Matthew M Draelos, Anyarat Thanapipatsiri, Hilda Sucipto, Kenichi Yokoyama

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Biosynthesis and Genome Mining Potentials of Nucleoside Natural Products.Chembiochem : a European journal of chemical biology · 2023
    Article
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  11. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Matthew M DraelosDepartment of Chemistry, Duke University, Durham, NC, USA.
Anyarat ThanapipatsiriDepartment of Biochemistry, Duke University School of Medicine, Durham, NC, USA.ORCID http://orcid.org/0000-0002-3263-0950
Hilda SuciptoDepartment of Biochemistry, Duke University School of Medicine, Durham, NC, USA.
Kenichi YokoyamaDepartment of Chemistry, Duke University, Durham, NC, USA. ken.yoko@duke.edu.ORCID http://orcid.org/0000-0001-5625-469X
Duke University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007171 · NIGMS · DUKE UNIVERSITY · PI KONTOS, CHRISTOPHER D · 1985 to 2021
$31.2M
Biosynthesis of peptidyl nucleoside antifungal antibioticsR01GM115729 · NIGMS · DUKE UNIVERSITY · PI YOKOYAMA, KENICHI · 2015 to 2023
$3.1M
NIGMS NIH HHS R01 GM115729NIGMS NIH HHS T32 GM007171
6 · The paper itself

Abstract

Kinases are annotated in many nucleoside biosynthetic gene clusters but generally are considered responsible only for self-resistance. Here, we report an unexpected 2'-phosphorylation of nucleoside biosynthetic intermediates in the nikkomycin and polyoxin pathways. This phosphorylation is a unique cryptic modification as it is introduced in the third of seven steps during aminohexuronic acid (AHA) nucleoside biosynthesis, retained throughout the pathway's duration, and is removed in the last step of the pathway. Bioinformatic analysis of reported nucleoside biosynthetic gene clusters indicates the presence of cryptic phosphorylation in other pathways and the importance of functional characterization of kinases in nucleoside biosynthetic pathways in general. This study also functionally characterized all of the enzymes responsible for AHA biosynthesis and revealed that AHA is constructed via a unique oxidative C-C bond cleavage reaction. The results indicate a divergent biosynthetic mechanism for three classes of antifungal nucleoside natural products.

Indexed as

Biological ProductsAminoglycosidesAntifungal AgentsBiosynthetic PathwaysComputational BiologyEscherichia coliMultigene FamilyNucleosidesPhosphorylationProtein KinasesPyrimidine NucleosidesSequence DeletionStreptomycesAminoglycosidesAntifungal AgentsBiological ProductsnikkomycinNucleosidespolyoxinProtein KinasesPyrimidine Nucleosides

Identifiers

PMID33257873
PMCPMC7855722
OpenAlexW3107648769

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.