Evidence map›Paper›PMID 33257546›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Functional characterization of 67 endocytic accessory proteins using multiparametric quantitative analysis of CCP dynamics.

Madhura Bhave, Rosa E Mino, Xinxin Wang, Jeon Lee, Heather M Grossman, Ashley M Lakoduk, Gaudenz Danuser, Sandra L Schmid, Marcel Mettlen

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

  1. VAMP8 function reveals tight linkage between endocytic recycling and endocytosis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Dynamic early recruitment of GAK-Hsc70 regulates coated pit maturation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
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  10. Cargo-specific effects of hypoxia on clathrin-mediated trafficking.Pflugers Archiv : European journal of physiology · 2024
    Article
  11. Article
  12. Combined Vorinostat and Chloroquine Inhibit Sodium-Iodide Symporter Endocytosis and Enhance Radionuclide Uptake In Vivo.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  13. Article
  14. Article
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  16. Self-organizing actin networks drive sequential endocytic protein recruitment and vesicle release on synthetic lipid bilayers.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Review
  18. Imaging nanoscale axial dynamics at the basal plasma membrane.The international journal of biochemistry & cell biology · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Madhura BhaveDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Rosa E MinoDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-6992-4744
Xinxin WangDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0002-7996-9628
Jeon LeeLyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0002-9071-7157
Heather M GrossmanDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Ashley M LakodukDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-9519-2727
Gaudenz DanuserDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0001-8583-2014
Sandra L SchmidDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390; sandra.schmid@czbiohub.org marcel.mettlen@utsouthwestern.edu.ORCID 0000-0002-1690-7024
Marcel MettlenDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390; sandra.schmid@czbiohub.org marcel.mettlen@utsouthwestern.edu.ORCID 0000-0001-7047-2749
The University of Texas Southwestern Medical Center · US

Funding

EARLY STEPS IN RECEPTOR-MEDIATED ENDOCYTOSISR01GM042455 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI METTLEN, MARCEL BERNARD · 1989 to 2020
$8.2M
Request for administrative supplement to Parent R01 GM073165 entitled "Mechanisms regulating clathrin-mediated endocytosis"R01GM073165 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI METTLEN, MARCEL BERNARD · 2006 to 2022
$6.8M
The Clathrin Coated Vesicle CycleR01MH061345 · NIMH · UT SOUTHWESTERN MEDICAL CENTER · PI SCHMID, SANDRA L. · 2010 to 2019
$5.0M
THE CLATHRIN COATED VESICLE CYCLER37MH061345 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHMID, SANDRA L. · 2000 to 2009
$4.7M
Functional causality in regulating cell morphogenesisR35GM136428 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI DANUSER, GAUDENZ · 2020 to 2024
$4.1M
NIGMS NIH HHS R01 GM042455NIGMS NIH HHS R01 GM073165NIGMS NIH HHS R35 GM136428NIMH NIH HHS R01 MH061345NIMH NIH HHS R37 MH061345
6 · The paper itself

Abstract

Clathrin-mediated endocytosis (CME) begins with the nucleation of clathrin assembly on the plasma membrane, followed by stabilization and growth/maturation of clathrin-coated pits (CCPs) that eventually pinch off and internalize as clathrin-coated vesicles. This highly regulated process involves a myriad of endocytic accessory proteins (EAPs), many of which are multidomain proteins that encode a wide range of biochemical activities. Although domain-specific activities of EAPs have been extensively studied, their precise stage-specific functions have been identified in only a few cases. Using single-guide RNA (sgRNA)/dCas9 and small interfering RNA (siRNA)-mediated protein knockdown, combined with an image-based analysis pipeline, we have determined the phenotypic signature of 67 EAPs throughout the maturation process of CCPs. Based on these data, we show that EAPs can be partitioned into phenotypic clusters, which differentially affect CCP maturation and dynamics. Importantly, these clusters do not correlate with functional modules based on biochemical activities. Furthermore, we discover a critical role for SNARE proteins and their adaptors during early stages of CCP nucleation and stabilization and highlight the importance of GAK throughout CCP maturation that is consistent with GAK's multifunctional domain architecture. Together, these findings provide systematic, mechanistic insights into the plasticity and robustness of CME.

Indexed as

Adaptor Proteins, Vesicular TransportCell LineCell MembraneClathrinCluster AnalysisCoated Pits, Cell-MembraneCRISPR-Cas SystemsEndocytosisGene Knockdown TechniquesGreen Fluorescent ProteinsHumansIntravital MicroscopyLuminescent AgentsMicroscopy, FluorescenceMolecular ImagingRNA, Small InterferingAdaptor Proteins, Vesicular TransportClathrinGreen Fluorescent ProteinsLuminescent AgentsRNA, Small Interferingclathrin-mediated endocytosisCRISPRi screenGAKSNAREstotal internal reflection fluorescence microscopy

Identifiers

PMID33257546
PMCPMC7749282
OpenAlexW3110342344

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.