Evidence map›Paper›PMID 33253324›Full record

ArticlePLoS pathogens2020

Human splice factors contribute to latent HIV infection in primary cell models and blood CD4+ T cells from ART-treated individuals.

Sara Moron-Lopez, Sushama Telwatte, Indra Sarabia, Emilie Battivelli, Mauricio Montano, Amanda B Macedo, Dvir Aran, Atul J Butte, R Brad Jones, Alberto Bosque and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  8. Review
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  11. Review
  12. HIV-1 latency reversal agent boosting is not limited by opioid use.medRxiv : the preprint server for health sciences · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. HibeRNAtion: HIV-1 RNA Metabolism and Viral Latency.Frontiers in cellular and infection microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Sara Moron-LopezUniversity of California San Francisco, San Francisco, California, United States of America.
Sushama TelwatteUniversity of California San Francisco, San Francisco, California, United States of America.
Indra SarabiaGeorge Washington University, Washington DC, United States of America.
Emilie BattivelliBuck Institute, Novato, California, United States of America.
Mauricio MontanoGladstone Institutes, San Francisco, California, United States of America.
Amanda B MacedoGeorge Washington University, Washington DC, United States of America.
Dvir AranUniversity of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0001-6334-5039
Atul J ButteUniversity of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-7433-2740
R Brad JonesInfectious Diseases Division, Weill Cornell Medicine, New York City, New York, United States of America.
Alberto BosqueGeorge Washington University, Washington DC, United States of America.ORCID 0000-0002-8800-2160
Eric VerdinBuck Institute, Novato, California, United States of America.
Warner C GreeneUniversity of California San Francisco, San Francisco, California, United States of America.
Joseph K WongUniversity of California San Francisco, San Francisco, California, United States of America.
Steven A YuklUniversity of California San Francisco, San Francisco, California, United States of America.ORCID 0000-0002-4578-9872
San Francisco VA Medical Center · USGeorge Washington University · USBuck Institute for Research on Aging · USGladstone Institutes · USUniversity of California, San Francisco · USCornell University · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Monica Gandhi · 1988 to 2026
$93.6M
SWG 2: Cure Research Scientific Working GroupP30AI117970 · NIAID · GEORGE WASHINGTON UNIVERSITY · PI Italo Mocchetti · 2015 to 2026
$29.6M
Viral reservoirs and sanctuaries in HAART - treated patients: role and mechanismsU19AI096109 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHACKER, TIMOTHY W · 2011 to 2015
$29.5M
BELIEVE: Bench to Bed Enhanced Lymphocyte Infusions to Engineer Viral EradicationUM1AI126617 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI JONES, R. BRAD, NIXON, DOUGLAS F · 2016 to 2020
$28.1M
Molecular Mechanisms of HIV LatencyR01DA041742 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2016 to 2021
$6.5M
Novel Model for HIV Latency in Primary Memory T CellsDP1DA031126 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2010 to 2014
$4.7M
Novel model for HIV Latency in Oral Primary Lymphoid TissuesR01DE026010 · NIDCR · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2016 to 2020
$4.2M
Novel single genome approaches to determine the mechanisms of HIV latent infection in blood, gut, and lymph nodesR01DK120387 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI LICHTERFELD, MATHIAS, YUKL, STEVEN A · 2019 to 2023
$4.1M
Identification of HIV latency biomarkers with a dual fluorescence reporter HIVR01AI117864 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2015 to 2020
$3.5M
Epigenetic regulation of HIV latencyR01DA030216 · NIDA · J. DAVID GLADSTONE INSTITUTES · PI VERDIN, ERIC M. · 2010 to 2014
$2.6M
Investigating Mechanisms of HIV Persistence in the GutR01DK108349 · NIDDK · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI YUKL, STEVEN A · 2015 to 2019
$2.2M
Understanding HIV latency reversal and clearance of infected cells in vivoR01AI132128 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K, YUKL, STEVEN A · 2017 to 2021
$1.9M
CSRD VA IK2 CX000520NIAID NIH HHS F31 AI147814NIAID NIH HHS HHSN272201200028CNIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI117970NIAID NIH HHS R01 AI117864NIAID NIH HHS R01 AI132128NIAID NIH HHS R33 AI116218NIAID NIH HHS R56 AI116342NIAID NIH HHS U19 AI096109NIAID NIH HHS UM1 AI126617NIDA NIH HHS DP1 DA031126NIDA NIH HHS R01 DA030216NIDA NIH HHS R01 DA041742NIDCR NIH HHS R01 DE026010NIDDK NIH HHS R01 DK108349NIDDK NIH HHS R01 DK120387
6 · The paper itself

Abstract

It is unclear what mechanisms govern latent HIV infection in vivo or in primary cell models. To investigate these questions, we compared the HIV and cellular transcription profile in three primary cell models and peripheral CD4+ T cells from HIV-infected ART-suppressed individuals using RT-ddPCR and RNA-seq. All primary cell models recapitulated the block to HIV multiple splicing seen in cells from ART-suppressed individuals, suggesting that this may be a key feature of HIV latency in primary CD4+ T cells. Blocks to HIV transcriptional initiation and elongation were observed more variably among models. A common set of 234 cellular genes, including members of the minor spliceosome pathway, was differentially expressed between unstimulated and activated cells from primary cell models and ART-suppressed individuals, suggesting these genes may play a role in the blocks to HIV transcription and splicing underlying latent infection. These genes may represent new targets for therapies designed to reactivate or silence latently-infected cells.

Indexed as

TranscriptomeAnti-Retroviral AgentsCD4-Positive T-LymphocytesHIV-1HIV InfectionsHumansRNA, ViralVirus LatencyAnti-Retroviral AgentsRNA, Viral

Identifiers

PMID33253324
PMCPMC7728277
OpenAlexW3107361914

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.