Evidence map›Paper›PMID 33251783›Full record

ArticleJournal of biomedical optics2020

Rapid tissue oxygenation mapping from snapshot structured-light images with adversarial deep learning.

Mason T Chen, Nicholas J Durr

Open access · goldAbstract read
In one paragraph

Article in Journal of biomedical optics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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  12. Deep learning in macroscopic diffuse optical imaging.Journal of biomedical optics · 2022
    Review
  13. Article
  14. Deep Learning in Biomedical Optics.Lasers in surgery and medicine · 2021
    Review
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  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mason T ChenJohns Hopkins University, Department of Biomedical Engineering, Baltimore, Maryland, United States.
Nicholas J DurrJohns Hopkins University, Department of Biomedical Engineering, Baltimore, Maryland, United States.
Johns Hopkins University · US

Funding

Quantitative topographic endoscopy for improved screening of non-polypoid colorectal neoplasmsR21EB024700 · NIBIB · JOHNS HOPKINS UNIVERSITY · PI DURR, NICHOLAS JAMES · 2018 to 2019
$623k
NIBIB NIH HHS R21 EB024700
6 · The paper itself

Abstract

significanceSpatial frequency-domain imaging (SFDI) is a powerful technique for mapping tissue oxygen saturation over a wide field of view. However, current SFDI methods either require a sequence of several images with different illumination patterns or, in the case of single-snapshot optical properties (SSOP), introduce artifacts and sacrifice accuracy.

aimWe introduce OxyGAN, a data-driven, content-aware method to estimate tissue oxygenation directly from single structured-light images. APPROACH: OxyGAN is an end-to-end approach that uses supervised generative adversarial networks. Conventional SFDI is used to obtain ground truth tissue oxygenation maps for ex vivo human esophagi, in vivo hands and feet, and an in vivo pig colon sample under 659- and 851-nm sinusoidal illumination. We benchmark OxyGAN by comparing it with SSOP and a two-step hybrid technique that uses a previously developed deep learning model to predict optical properties followed by a physical model to calculate tissue oxygenation.

resultsWhen tested on human feet, cross-validated OxyGAN maps tissue oxygenation with an accuracy of 96.5%. When applied to sample types not included in the training set, such as human hands and pig colon, OxyGAN achieves a 93% accuracy, demonstrating robustness to various tissue types. On average, OxyGAN outperforms SSOP and a hybrid model in estimating tissue oxygenation by 24.9% and 24.7%, respectively. Finally, we optimize OxyGAN inference so that oxygenation maps are computed ∼10 times faster than previous work, enabling video-rate, 25-Hz imaging.

conclusionsDue to its rapid acquisition and processing speed, OxyGAN has the potential to enable real-time, high-fidelity tissue oxygenation mapping that may be useful for many clinical applications.

Indexed as

Deep LearningAnimalsHandLungSwinemachine learningoptical propertyspatial frequency-domain imaging

Identifiers

PMID33251783
PMCPMC7701163
OpenAlexW3040406539

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.