Evidence map›Paper›PMID 33251531›Full record

ArticleMedical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention2020

A 3D Convolutional Encapsulated Long Short-Term Memory (3DConv-LSTM) Model for Denoising fMRI Data.

Chongyue Zhao, Hongming Li, Zhicheng Jiao, Tianming Du, Yong Fan

Abstract read
In one paragraph

Article in Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Explainable Contrastive Multiview Graph Representation of Brain, Mind, and Behavior.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2022
    Article
  7. Revealing Continuous Brain Dynamical Organization with Multimodal Graph Transformer.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2022
    Article
  8. Predicting Spatio-Temporal Human Brain Response Using fMRI.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2022
    Article
  9. Article
  10. Deep Generative Analysis for Task-Based Functional MRI Experiments.Proceedings of machine learning research · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chongyue ZhaoCenter for Biomedical Image Computing and Analysis, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Hongming LiCenter for Biomedical Image Computing and Analysis, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Zhicheng JiaoCenter for Biomedical Image Computing and Analysis, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Tianming DuCenter for Biomedical Image Computing and Analysis, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Yong FanCenter for Biomedical Image Computing and Analysis, Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.

Funding

Personalized Functional Network Modeling to Characterize and Predict Psychopathology in YouthR01EB022573 · NIBIB · UNIVERSITY OF PENNSYLVANIA · PI Yong Fan, Theodore Satterthwaite · 2016 to 2026
$6.0M
Individualized Closed Loop TMS for Working Memory EnhancementR01MH120811 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI FAN, YONG, OATHES, DESMOND · 2019 to 2023
$3.5M
Biomedical Image Computing and Informatics ClusterS10OD023495 · OD · UNIVERSITY OF PENNSYLVANIA · PI DAVATZIKOS, CHRISTOS · 2017 to 2017
$1.9M
NIBIB NIH HHS R01 EB022573NIH HHS S10 OD023495NIMH NIH HHS R01 MH120811
6 · The paper itself

Abstract

Function magnetic resonance imaging (fMRI) data are typically contaminated by noise introduced by head motion, physiological noise, and thermal noise. To mitigate noise artifact in fMRI data, a variety of denoising methods have been developed by removing noise factors derived from the whole time series of fMRI data and therefore are not applicable to real-time fMRI data analysis. In the present study, we develop a generally applicable, deep learning based fMRI denoising method to generate noise-free realistic individual fMRI volumes (time points). Particularly, we develop a fully data-driven 3D convolutional encapsulated Long Short-Term Memory (3DConv-LSTM) approach to generate noise-free fMRI volumes regularized by an adversarial network that makes the generated fMRI volumes more realistic by fooling a critic network. The 3DConv-LSTM model also integrates a gate-controlled self-attention model to memorize short-term dependency and historical information within a memory pool. We have evaluated our method based on both task and resting state fMRI data. Both qualitative and quantitative results have demonstrated that the proposed method outperformed state-of-the-art alternative deep learning methods.

Indexed as

3D convolutional LSTMAdversarial regularizerfMRI denoisingGate-controlled self-attention

Identifiers

PMID33251531
PMCPMC7687287

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.