Evidence map›Paper›PMID 33250959›Full record

ArticleWorld journal of gastrointestinal oncology2020

Programmed death 1, ligand 1 and 2 correlated genes and their association with mutation, immune infiltration and clinical outcomes of hepatocellular carcinoma.

Qiu-Ju Sheng, Wen-Yue Tian, Xiao-Guang Dou, Chong Zhang, Yan-Wei Li, Chao Han, Yao-Xin Fan, Ping-Ping Lai, Yang Ding

Open access · diamondAbstract read
In one paragraph

Article in World journal of gastrointestinal oncology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Qiu-Ju ShengDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Wen-Yue TianDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Xiao-Guang DouDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Chong ZhangDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Yan-Wei LiDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Chao HanDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Yao-Xin FanDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Ping-Ping LaiDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China.
Yang DingDepartment of Infectious Diseases, Shengjing Hospital of China Medical University, Shenyang 110022, Liaoning Province, China. yding0903@sina.com.
China Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe exact regulation network of programmed death 1 (PD-1), programmed death ligand 1 (PD-L1), and programmed death ligand 2 (PD-L2) signaling in immune escape is largely unknown. We aimed to describe the gene expression profiles related to PD-1 as well as its ligands PD-L1 and PD-L2, thus deciphering their possible biological processes in hepatocellular carcinoma (HCC).

aimTo find the possible mechanism of function of PD-1, PD-L1, and PD-L2 in HCC.

methodsBased on the expression data of HCC from The Cancer Genome Atlas, the PD-1/PD-L1/PD-L2 related genes were screened by weighted correlation network analysis method and the biological processes of certain genes were enriched. Relation of PD1/PD-L1/PD-L2 with immune infiltration and checkpoints was investigated by co-expression analysis. The roles of PD-1/PD-L1/PD-L2 in determination of clinical outcome were also analyzed.

resultsMutations of calcium voltage-gated channel subunit alpha1 E, catenin beta 1, ryanodine receptor 2, tumor suppressor protein p53, and Titin altered PD-1/PD-L1/PD-L2 expression profiles in HCC. PD-1, PD-L1, and PD-L2 related genes were mainly enriched in biological procedures of T cell activation, cell adhesion, and other important lymphocyte effects. In addition, PD-1/PD-L1/PD-L2 was related with immune infiltration of CD8 T cells, cytotoxic lymphocytes, fibroblasts, and myeloid dendritic cells. Immune checkpoints of CTLA4, CD27, CD80, CD86, and CD28 were significantly related to the PD-1/PD-L1/PD-L2 axis. Clinically, PD-1 and PD-L2 expression was correlated with recurrence (

conclusionMutations of key genes influence PD-1, PD-L1, and PD-L2 expression. PD-1, PD-L1, and PD-L2 related genes participate in T cell activation, cell adhesion, and other important lymphocyte effects. The finding that PD-1/PD-L1/PD-L2 is related to immune infiltration and other immune checkpoints would expand our understanding of promising anti-PD-1 immunotherapy.

Indexed as

CancerHepatocellular carcinomaImmuneProgrammed death 1Programmed death ligand 1Programmed death ligand 2

Identifiers

PMID33250959
PMCPMC7667459
OpenAlexW3104884497

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.