Evidence map›Paper›PMID 33248223›Full record

ArticleOsteoarthritis and cartilage2021

Transcriptional response of human articular chondrocytes treated with fibronectin fragments: an in vitro model of the osteoarthritis phenotype.

K S M Reed, V Ulici, C Kim, S Chubinskaya, R F Loeser, D H Phanstiel

Open access · greenAbstract read
In one paragraph

Article in Osteoarthritis and cartilage, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. CSPG4Osteoarthritis and cartilage open · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. RMD open · 2025
    Article
  8. Matrikine stimulation of equine synovial fibroblasts and chondrocytes results in an in vitro osteoarthritis phenotype.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2025
    Article
  9. Article
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  11. Article
  12. Article
  13. Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

K S M ReedThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC, 27599, USA. Electronic address: ksmetz@email.unc.edu.
V UliciThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC, USA; Division of Rheumatology, Allergy and Immunology, University of North Carolina, Chapel Hill, NC, USA. Electronic address: VUlici@Lifespan.org.
C KimThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC, USA; Division of Rheumatology, Allergy and Immunology, University of North Carolina, Chapel Hill, NC, USA. Electronic address: ckim323@gmail.com.
S ChubinskayaDepartment of Pediatrics, Rush University Medical Center, Chicago, IL, USA. Electronic address: Susanna_Chubinskaya@rush.edu.
R F LoeserThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC, USA; Division of Rheumatology, Allergy and Immunology, University of North Carolina, Chapel Hill, NC, USA. Electronic address: richard_loeser@med.unc.edu.
D H PhanstielThurston Arthritis Research Center, University of North Carolina, Chapel Hill, NC, USA; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, NC, 27599, USA; Department of Cell Biology and Physiology, University of North Carolina, Chapel Hill, NC, USA. Electronic address: douglas_phanstiel@med.unc.edu.
University of North Carolina at Chapel Hill · USRush University Medical Center · US

Funding

NRSA IN GENETICST32GM007092 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEKELSKY, JEFF J. · 1985 to 2019
$5.9M
Oxidative Stress and the Development of OsteoarthritisR01AG044034 · NIA · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICHARD F LOESER · 2012 to 2026
$5.7M
Integrin Function in CartilageR37AR049003 · NIAMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI LOESER, RICHARD F · 2012 to 2021
$4.1M
Mechanisms of Dynamic Chromatin Looping During Differentiation - Common Fund Data SupplementR35GM128645 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Douglas H. Phanstiel · 2018 to 2026
$3.4M
The development and application of tools to characterize the 4D nucleomeR00HG008662 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PHANSTIEL, DOUGLAS H. · 2017 to 2019
$747k
NHGRI NIH HHS R00 HG008662NIAMS NIH HHS R37 AR049003NIA NIH HHS R01 AG044034NIGMS NIH HHS R35 GM128645NIGMS NIH HHS T32 GM007092
6 · The paper itself

Abstract

objectiveFibronectin is a matrix protein that is fragmented during cartilage degradation in osteoarthritis (OA). Treatment of chondrocytes with fibronectin fragments (FN-f) has been used to model OA in vitro, but the system has not been fully characterized. This study sought to define the transcriptional response of chondrocytes to FN-f, and directly compare it to responses traditionally observed in OA.

designNormal human femoral chondrocytes isolated from tissue donors were treated with either FN-f or PBS (control) for 3, 6, or 18 h. RNA-seq libraries were compared between time-matched FN-f and control samples in order to identify changes in gene expression over time. Differentially expressed genes were compared to a published OA gene set and used for pathway, transcription factor motif, and kinome analysis.

resultsFN-f treatment resulted in 3,914 differentially expressed genes over the time course. Genes that are up- or downregulated in OA were significantly up- (P < 0.00001) or downregulated (P < 0.0004) in response to FN-f. Early response genes were involved in proinflammatory pathways, whereas many late response genes were involved in ferroptosis. The promoters of upregulated genes were enriched for NF-κB, AP-1, and IRF motifs. Highly upregulated kinases included CAMK1G, IRAK2, and the uncharacterized kinase DYRK3, while growth factor receptors TGFBR2 and FGFR2 were downregulated.

conclusionsFN-f treatment of normal human articular chondrocytes recapitulated many key aspects of the OA chondrocyte phenotype. This in vitro model is promising for future OA studies, especially considering its compatibility with genomics and genome-editing techniques.

Indexed as

Calcium-Calmodulin-Dependent Protein Kinase Type 1Cartilage, ArticularChondrocytesFemurFibronectinsGene ExpressionHumansInterferon Regulatory FactorsInterleukin-1 Receptor-Associated KinasesIn Vitro TechniquesNF-kappa BOsteoarthritisPeptide FragmentsPhenotypePromoter Regions, GeneticProtein Serine-Threonine KinasesCalcium-Calmodulin-Dependent Protein Kinase Type 1CAMK1G protein, humanDYRK3 protein, humanFGFR2 protein, humanFibronectinsInterferon Regulatory FactorsInterleukin-1 Receptor-Associated KinasesNF-kappa BPeptide FragmentsProtein Serine-Threonine KinasesProtein-Tyrosine KinasesReceptor, Fibroblast Growth Factor, Type 2Receptor, Transforming Growth Factor-beta Type IITGFBR2 protein, humanTranscription Factor AP-1CartilageChondrocytesFibronectinOsteoarthritisRNA-seq

Identifiers

PMID33248223
PMCPMC7870543
OpenAlexW3107916781

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.