Evidence map›Paper›PMID 33247560›Full record

ArticleJournal of biomedical optics2020

Deep learning-level melanoma detection by interpretable machine learning and imaging biomarker cues.

Daniel S Gareau, James Browning, Joel Correa Da Rosa, Mayte Suarez-Farinas, Samantha Lish, Amanda M Zong, Benjamin Firester, Charles Vrattos, Yael Renert-Yuval, Mauricio Gamboa and 11 more

Open access · goldAbstract read
In one paragraph

Article in Journal of biomedical optics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 2 syntheses or guidelines pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 5 countries.

Daniel S GareauThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
James BrowningThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Joel Correa Da RosaThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Mayte Suarez-FarinasIcahn School of Medicine at Mount Sinai Medical Center, Department of Dermatology, New York, New Yor, United States.
Samantha LishThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Amanda M ZongThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Benjamin FiresterThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Charles VrattosThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Yael Renert-YuvalThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Mauricio GamboaHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
María G ValloneHospital Alemán, Department of Dermatology, Buenos Aires, Argentina.
Zamira F Barragán-EstudilloUniversidad Nacional Autónoma de México, Dermato-Oncology Clinic, Research Division, Faculty of Medi, Mexico.
Alejandra L Tamez-PeñaHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
Javier MontoyaUniversidad San Sebastian, School of Medicine, Concepción, Chile.
Miriam A Jesús-SilvaHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
Cristina CarreraHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
Josep MalvehyHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
Susana PuigHospital Clínic de Barcelona, Universitat de Barcelona, Department of Dermatology, Barcelona, Spain.
Ashfaq MarghoobMemorial Sloan Kettering Cancer Center, Dermatology Service, New York, New York, United States.
John A CarucciNew York University, Ronald O. Pearlman Department of Dermatology, New York, New York, United States.
James G KruegerThe Rockefeller University, Laboratory of Investigative Dermatology, New York, New York, United States.
Rockefeller University · USUniversitat de Barcelona · ESHospital Clínic de Barcelona · ESHospital Alemán · ARMemorial Sloan Kettering Cancer Center · USMount Sinai Medical Center · USNew York University · USSan Sebastián University · CLUniversidad Nacional Autónoma de México · MX

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Developing, Demonstrating, and Disseminating Innovative Programs to Achieve Translational SuccessUL1TR001866 · NCATS · ROCKEFELLER UNIVERSITY · PI COLLER, BARRY, KRUEGER, JAMES G · 2016 to 2025
$40.6M
Sensory Cue Integration in Melanoma ScreeningR21CA240254 · NCI · ROCKEFELLER UNIVERSITY · PI GAREAU, DANIEL SUMMER · 2020 to 2020
$413k
NCATS NIH HHS UL1 TR001866NCI NIH HHS P30 CA008748NCI NIH HHS R21 CA240254
6 · The paper itself

Abstract

significanceMelanoma is a deadly cancer that physicians struggle to diagnose early because they lack the knowledge to differentiate benign from malignant lesions. Deep machine learning approaches to image analysis offer promise but lack the transparency to be widely adopted as stand-alone diagnostics.

aimWe aimed to create a transparent machine learning technology (i.e., not deep learning) to discriminate melanomas from nevi in dermoscopy images and an interface for sensory cue integration. APPROACH: Imaging biomarker cues (IBCs) fed ensemble machine learning classifier (Eclass) training while raw images fed deep learning classifier training. We compared the areas under the diagnostic receiver operator curves.

resultsOur interpretable machine learning algorithm outperformed the leading deep-learning approach 75% of the time. The user interface displayed only the diagnostic imaging biomarkers as IBCs.

conclusionsFrom a translational perspective, Eclass is better than convolutional machine learning diagnosis in that physicians can embrace it faster than black box outputs. Imaging biomarkers cues may be used during sensory cue integration in clinical screening. Our method may be applied to other image-based diagnostic analyses, including pathology and radiology.

Indexed as

Deep LearningMelanomaSkin NeoplasmsAlgorithmsBiomarkersCuesDermoscopyHumansMachine LearningBiomarkersdiagnostic applicationimaging biomarkersmachine learningsensory cue integrationskin cancer classification

Identifiers

PMID33247560
PMCPMC7702097
OpenAlexW3107602024

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.