Evidence map›Paper›PMID 33247197›Full record

ArticleCommunications biology2020

An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology.

Amir Momen-Roknabadi, Panos Oikonomou, Maxwell Zegans, Saeed Tavazoie

Open access · goldAbstract readValidation Study
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 51 citations in OpenAlex.

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  13. FromJournal of fungi (Basel, Switzerland) · 2023
    Review
  14. An improved CRISPRi system inSynthetic and systems biotechnology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Amir Momen-RoknabadiDepartment of Biological Sciences, Columbia University, New York City, NY, USA.ORCID 0000-0001-6233-1401
Panos OikonomouDepartment of Biological Sciences, Columbia University, New York City, NY, USA.ORCID 0000-0001-7387-0312
Maxwell ZegansDepartment of Systems Biology, Columbia University, New York City, NY, USA.ORCID 0000-0003-2753-6801
Saeed TavazoieDepartment of Biological Sciences, Columbia University, New York City, NY, USA. st2744@columbia.edu.ORCID 0000-0003-2183-4162
Columbia University · US

Funding

Systems biological interrogation of bacterial persistenceR01AI077562 · NIAID · PRINCETON UNIVERSITY · PI TAVAZOIE, SAEED F · 2010 to 2024
$6.4M
Massively parallel mapping of all molecular interactions in a single tubeR01HG009065 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TAVAZOIE, SAEED F · 2015 to 2019
$3.2M
Stochastic tuning: a novel regulatory mechanism for cellular adaptationR01GM139215 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TAVAZOIE, SAEED F · 2020 to 2023
$1.6M
Systems Level Characterization of a New Epigenetic Mechanism of Gene Expression and Cellular AdaptationF32GM125170 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MOMEN-ROKNABADI, AMIR · 2018 to 2020
$146k
NHGRI NIH HHS R01 HG009065NIAID NIH HHS R01 AI077562NIAID NIH HHS R01-AI077562NIGMS NIH HHS F32 GM125170NIGMS NIH HHS R01 GM139215
6 · The paper itself

Abstract

Genome-scale CRISPR interference (CRISPRi) is widely utilized to study cellular processes in a variety of organisms. Despite the dominance of Saccharomyces cerevisiae as a model eukaryote, an inducible genome-wide CRISPRi library in yeast has not yet been presented. Here, we present a genome-wide, inducible CRISPRi library, based on spacer design rules optimized for S. cerevisiae. We have validated this library for genome-wide interrogation of gene function across a variety of applications, including accurate discovery of haploinsufficient genes and identification of enzymatic and regulatory genes involved in adenine and arginine biosynthesis. The comprehensive nature of the library also revealed refined spacer design parameters for transcriptional repression, including location, nucleosome occupancy and nucleotide features. CRISPRi screens using this library can identify genes and pathways with high precision and a low false discovery rate across a variety of experimental conditions, enabling rapid and reliable assessment of genetic function and interactions in S. cerevisiae.

Indexed as

CRISPR-Cas SystemsGene LibraryAdenineArginineGenes, FungalPlasmidsSaccharomyces cerevisiaeAdenineArginine

Identifiers

PMID33247197
PMCPMC7695836
OpenAlexW3109741339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.