Evidence map›Paper›PMID 33247117›Full record

ArticleNPJ biofilms and microbiomes2020

Genetic requirements and transcriptomics of Helicobacter pylori biofilm formation on abiotic and biotic surfaces.

Skander Hathroubi, Shuai Hu, Karen M Ottemann

Open access · goldAbstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 54 citations in OpenAlex.

  1. Characterization ofJournal of bacteriology · 2026
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  6. Novel anti-virulence strategy againstFrontiers in microbiology · 2026
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  7. Characterization ofFrontiers in microbiology · 2026
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  12. Article
  13. Nanomaterials: A Prospective Strategy for Biofilm-FormingInternational journal of nanomedicine · 2025
    Review
  14. Molecular Mechanisms of Biofilm Formation inAntibiotics (Basel, Switzerland) · 2024
    Review
  15. Optimization ofInternational journal of molecular sciences · 2024
    Article
  16. Article
  17. Article
  18. Novel therapeutic regimens againstFrontiers in microbiology · 2024
    Review
  19. Article
  20. The potential of Bacillus and Enterococcus probiotic strains to combat helicobacter pylori attachment to the biotic and abiotic surfaces.International microbiology : the official journal of the Spanish Society for Microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 2 countries.

Skander HathroubiDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA, 95060, USA. skander.hathroubi@hu-berlin.de.ORCID 0000-0002-5917-2785
Shuai HuDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA, 95060, USA.
Karen M OttemannDepartment of Microbiology and Environmental Toxicology, University of California, Santa Cruz, CA, 95060, USA. ottemann@ucsc.edu.
University of California, Santa Cruz · US

Funding

The function of chemotactic signal transduction during colonization and diseaseR01AI116946 · NIAID · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI OTTEMANN, KAREN M · 2016 to 2025
$5.1M
BSLII Stationed Zeiss 880 Confocal Microscope with AiryscanS10OD023528 · OD · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI YILDIZ, HAVVA FITNAT · 2017 to 2017
$456k
NIAID NIH HHS R01 AI116946NIH HHS S10 OD023528
6 · The paper itself

Abstract

Biofilm growth is a widespread mechanism that protects bacteria against harsh environments, antimicrobials, and immune responses. These types of conditions challenge chronic colonizers such as Helicobacter pylori but it is not fully understood how H. pylori biofilm growth is defined and its impact on H. pylori survival. To provide insights into H. pylori biofilm growth properties, we characterized biofilm formation on abiotic and biotic surfaces, identified genes required for biofilm formation, and defined the biofilm-associated gene expression of the laboratory model H. pylori strain G27. We report that H. pylori G27 forms biofilms with a high biomass and complex flagella-filled 3D structures on both plastic and gastric epithelial cells. Using a screen for biofilm-defective mutants and transcriptomics, we discovered that biofilm cells demonstrated lower transcripts for TCA cycle enzymes but higher ones for flagellar formation, two type four secretion systems, hydrogenase, and acetone metabolism. We confirmed that biofilm formation requires flagella, hydrogenase, and acetone metabolism on both abiotic and biotic surfaces. Altogether, these data suggest that H. pylori is capable of adjusting its phenotype when grown as biofilm, changing its metabolism, and re-shaping flagella, typically locomotion organelles, into adhesive structures.

Indexed as

Gene Regulatory NetworksMutationBacterial ProteinsBacteriological TechniquesBiofilmsCell LineEpithelial CellsGastric MucosaGene Expression ProfilingGene Expression Regulation, BacterialHelicobacter pyloriHumansPhenotypePlasticsSequence Analysis, RNABacterial ProteinsPlastics

Identifiers

PMID33247117
PMCPMC7695850
OpenAlexW3108501998

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.