Evidence map›Paper›PMID 33246406›Full record

ArticleBMC genomics2020

Beauveria bassiana ERL836 and JEF-007 with similar virulence show different gene expression when interacting with cuticles of western flower thrips, Frankniella occidentalis.

Sihyeon Kim, Jong Cheol Kim, Se Jin Lee, Mi Rong Lee, So Eun Park, Dongwei Li, Sehyeon Baek, Tae Young Shin, Jae Su Kim

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Virulence ofInsects · 2023
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  8. Pathogenicity ofInsects · 2022
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  9. Interactive Gene Expression BetweenFrontiers in physiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sihyeon KimDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Jong Cheol KimDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Se Jin LeeDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL, 32611-0700, USA.
Mi Rong LeeDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
So Eun ParkDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Dongwei LiDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Sehyeon BaekDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Tae Young ShinDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea.
Jae Su KimDepartment of Agricultural Biology, Jeonbuk National University, Jeonju, 54596, South Korea. jskim10@jbnu.ac.kr.ORCID http://orcid.org/0000-0003-0128-0684
Jeonbuk National University · KRJeonju National University of Education · KRUniversity of Florida · US

Funding

Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries 118103-03
6 · The paper itself

Abstract

backgroundInsect-killing fungal species, Beauveria bassiana, is as an environment-friendly pest management tool, and many isolates are on the track of industrialization. However, some of B. bassiana isolates show similar morphology and virulence against insect pests, and so it is hard to differentiate them. Herein we used two patented isolates, ERL836 and JEF-007, and investigated their virulence against western flower thrips, Frankliniella occidentalis, and further analyzed genome structures and transcriptional responses when interacting with cuticles of thrips to see possible differences on the initial step of fungal infection.

resultsThe two isolates showed no significant differences in fungal growth, conidial production, and virulence against thrips, and they were structurally similar in genome. But, in transcription level, ERL836 appeared to infect thrips easily, while JEF-007 appeared to have more difficulty. In the GO analysis of ERL836 DEGs (differentially expressed genes), the number of up-regulated genes was much larger than that of down-regulated genes, when compared to JEF-007 DEGs (more genes down-regulated). Interestingly, in the enrichment analysis using shared DEGs between two infecting isolates, plasma membrane-mediated transporter activity and fatty acid degradation pathway including cytochrome P450 were more active in infecting ERL836.

conclusionThe two B. bassiana isolates had similar morphology and virulence as well as genome structure, but in transcription level they differently interacted with the cuticle of western flower thrips. This comparative approach using shared DEG analysis could be easily applied to characterize the difference of the two B. bassiana isolates, JEF-007 and ERL836.

Indexed as

BeauveriaThysanopteraAnimalsFlowersGene ExpressionVirulenceBeauveria bassianaCytochrome P450GenomeTranscriptionWestern flower thrips

Identifiers

PMID33246406
PMCPMC7694944
OpenAlexW3109437762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.