Evidence map›Paper›PMID 33244879›Full record

ArticleJournal of cachexia, sarcopenia and muscle2021

Single-cell RNA sequencing and lipidomics reveal cell and lipid dynamics of fat infiltration in skeletal muscle.

Ziye Xu, Wenjing You, Wentao Chen, Yanbing Zhou, Qiuyun Nong, Teresa G Valencak, Yizhen Wang, Tizhong Shan

Open access · goldAbstract read
In one paragraph

Article in Journal of cachexia, sarcopenia and muscle, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 120 citations in OpenAlex.

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  14. Insights into intramuscular adipose-muscle signaling in the diabetic lower extremity.Journal of clinical & translational endocrinology · 2025
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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Ziye XuCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Wenjing YouCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Wentao ChenCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Yanbing ZhouCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Qiuyun NongCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Teresa G ValencakCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Yizhen WangCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.
Tizhong ShanCollege of Animal Sciences, Zhejiang University, Hangzhou, Zhejiang, China.ORCID 0000-0002-4738-414X
Ministry of Education · NZZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAgeing is accompanied by sarcopenia and intramuscular fat (IMAT) infiltration. In skeletal muscle, fat infiltration is a common feature in several myopathies and is associated with muscular dysfunction and insulin resistance. However, the cellular origin and lipidomic and transcriptomic changes during fat infiltration in skeletal muscle remain unclear.

methodsIn the current study, we generated a high IMAT-infiltrated skeletal muscle model by glycerol (GLY) injection. Single-cell RNA sequencing and lineage tracing were performed on GLY-injured skeletal muscle at 5 days post-injection (DPI) to identify the cell origins and dynamics. Lipidomics and RNA sequencing were performed on IMAT-infiltrated skeletal muscle at 14 DPI (or 17 DPI for the cold treatment) to analyse alterations of lipid compositions and gene expression levels.

resultsWe identified nine distinct major clusters including myeloid-derived cells (52.13%), fibroblast/fibro/adipogenic progenitors (FAPs) (23.24%), and skeletal muscle stem cells (2.02%) in GLY-injured skeletal muscle. Clustering and pseudotemporal trajectories revealed six subpopulations in fibroblast/FAPs and 10 subclusters in myeloid-derived cells. A subpopulation of myeloid-derived cells expressing adipocyte-enriched genes and Pdgfra

conclusionsOur results showed that a subpopulation of myeloid-derived cells may contribute to IMAT infiltration. GLY-induced IMAT infiltration changed the lipid composition and gene expression profiles. Short-term cold exposure might regulate lipid metabolism and its related signalling pathways in fat-infiltrated muscle. Our study provides a comprehensive resource describing the molecular signature of fat infiltration in skeletal muscle.

Indexed as

LipidomicsPhosphatidylinositol 3-KinasesFatty AcidsMuscle, SkeletalSequence Analysis, RNASingle-Cell AnalysisFatty AcidsPhosphatidylinositol 3-KinasesFat infiltrationIntramuscular fatLipidomicsMuscle wastingSarcopeniaSingle-cell RNA sequencingSkeletal muscle

Identifiers

PMID33244879
PMCPMC7890272
OpenAlexW3108425874

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.