Evidence map›Paper›PMID 33244613›Full record

ArticleEuropean biophysics journal : EBJ2021

Exploring the diversity of mechanosensitive channels in bacterial genomes.

Sarah C Johnson, Jordyn Veres, Hannah R Malcolm

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In one paragraph

Article in European biophysics journal : EBJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Life science alliance · 2023
    Article
  5. Article
  6. Cell Envelope Stress Response in Pseudomonas aeruginosa.Advances in experimental medicine and biology · 2022
    Article
  7. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sarah C JohnsonDepartment of Chemistry, University of North Florida, Jacksonville, FL, USA.
Jordyn VeresDepartment of Chemistry, University of North Florida, Jacksonville, FL, USA.
Hannah R MalcolmDepartment of Chemistry, University of North Florida, Jacksonville, FL, USA. Hannah.malcolm@unf.edu.ORCID http://orcid.org/0000-0001-9792-8494
University of North Florida · US

Funding

University of North Florida Academic Affairs Faculty Development GrantUniversity of North Florida Van Vleck Early Career Teaching Excellence Award
6 · The paper itself

Abstract

Mechanosensitive ion channels are responsible for touch sensation and proprioception in higher level organisms such as humans and recovery after osmotic stress in bacteria. Bacterial mechanosensitive channels are homologous to either the mechanosensitive channel of large conductance (MscL) or the mechanosensitive channel of small conductance (MscS). In the E. coli genome there are seven unique mechanosensitive channels, a single MscL homologue, and six MscS homologues. The six MscS homologues are members of the diverse MscS superfamily of ion channels, and these channels show variation on both the N and C termini when compared to E. coli MscS. In bacterial strains with phenotypic analysis of the endogenous mechanosensors, the quantity of MscS superfamily members in the genome range from 2 to 6 and all of the strains contain a copy of MscL. Here, we show an in-depth analysis of over 150 diverse bacterial genomes, encompassing nine phyla, to determine the number of genomes that contain an MscL homologue and the average number of MscS superfamily members per genome. We determined that the average genome contains 4 ± 3 MscS homologues and 67% of bacterial genomes encode for a MscL homologue.

Indexed as

Genome, BacterialIon ChannelsEscherichia coliGenetic VariationMechanotransduction, CellularPhylogenyIon ChannelsBacterial ion channelsMechanosensitive ion channelsMscLMscS superfamily

Identifiers

PMID33244613
OpenAlexW3109099161

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.