ArticlePlant & cell physiology2021
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East Asian Genotypes.
Article in Plant & cell physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed, 45 citations in OpenAlex.
- Wheat's war against stripe rust: Integrating host immunity, genomics and breeding for durable resistance.The plant genome · 2026Review
- Dynamics of resistant genes and their relationship to resistance to wheat yellow mosaic disease in Japanese wheat germplasms.Breeding science · 2026Article
- Extensive phenotyping and genome-wide analysis of grain number-related traits in a diverse wheat core collection.The plant genome · 2026Article
- Genomics in wheat improvement: Progress and perspectives.The plant genome · 2026Review
- A likelihood ratio test for detecting shifts in homeolog expression ratios in allopolyploids.The New phytologist · 2026Article
- De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome.Nature communications · 2025Article
- Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Unveiling the evolutionary and transcriptional landscape of ERF transcription factors in wheat genomes: a genome-wide comparative analysis.BMC genomics · 2025Article
- The Genetics of Plant-Plant Interactions and Their Cascading Effects on Agroecosystems-from Model Plants to Applications.Plant & cell physiology · 2025Review
- Enhancing the breeding gene pool of wheat using accessions in gene banks as demonstrated by the Watkins collection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Genomic analysis of Zhou8425B, a key founder parent, reveals its genetic contributions to elite agronomic traits in wheat breeding.Plant communications · 2025Article
- Breeding potential of Spanish bread wheat landraces: genetic variability in vernalization and photoperiod sensitivity.Frontiers in plant science · 2025Article
- Tracing post-domestication historical events and screening pre-breeding germplasm from large gene pools in wheat in the absence of phenotype data.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Genomic diversity of the Japanese wheat core collection and selection of alleles for agronomic traits in the breeding process.Breeding science · 2024Article
- Whole-genome sequencing of diverse wheat accessions uncovers genetic changes during modern breeding in China and the United States.The Plant cell · 2023Article
- A low-coverage 3' RNA-seq to detect homeolog expression in polyploid wheat.NAR genomics and bioinformatics · 2023Article
- Identification of a UDP-glucosyltransferase conferring deoxynivalenol resistance in Aegilops tauschii and wheat.Plant biotechnology journal · 2023Article
- Proteomic and Biochemical Approaches Elucidate the Role of Millimeter-Wave Irradiation in Wheat Growth under Flooding Stress.International journal of molecular sciences · 2022Article
- Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade.Nature communications · 2022Article
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Authors and funding
33 authors at 12 institutions in 5 countries.
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No grant is acknowledged in the PubMed record.
Abstract
Bread wheat is a major crop that has long been the focus of basic and breeding research. Assembly of its genome has been difficult because of its large size and allohexaploid nature (AABBDD genome). Following the first reported assembly of the genome of the experimental strain Chinese Spring (CS), the 10+ Wheat Genomes Project was launched to produce multiple assemblies of worldwide modern cultivars. The only Asian cultivar in the project is Norin 61, a representative Japanese cultivar adapted to grow across a broad latitudinal range, mostly characterized by a wet climate and a short growing season. Here, we characterize the key aspects of its chromosome-scale genome assembly spanning 15 Gb with a raw scaffold N50 of 22 Mb. Analysis of the repetitive elements identified chromosomal regions unique to Norin 61 that encompass a tandem array of the pathogenesis-related 13 family. We report novel copy-number variations in the B homeolog of the florigen gene FT1/VRN3, pseudogenization of its D homeolog and the association of its A homeologous alleles with the spring/winter growth habit. Furthermore, the Norin 61 genome carries typical East Asian functional variants different from CS, ranging from a single nucleotide to multi-Mb scale. Examples of such variation are the Fhb1 locus, which confers Fusarium head-blight resistance, Ppd-D1a, which confers early flowering, Glu-D1f for Asian noodle quality and Rht-D1b, which introduced semi-dwarfism during the green revolution. The adoption of Norin 61 as a reference assembly for functional and evolutionary studies will enable comprehensive characterization of the underexploited Asian bread wheat diversity.
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