Evidence map›Paper›PMID 33244166›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2021

De novo loss-of-function variants in X-linked MED12 are associated with Hardikar syndrome in females.

Dong Li, Alanna Strong, Kaitlyn M Shen, David Cassiman, Maria Van Dyck, Natalia Duarte Linhares, Eugenia Ribeiro Valadares, Tiancheng Wang, Sergio D J Pena, Jaak Jaeken and 10 more

Open access · bronzeAbstract read
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In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. MED12 dysregulation: insights into cancer and therapeutic resistance.Naunyn-Schmiedeberg's archives of pharmacology · 2025
    Review
  6. Review
  7. Article
  8. Article
  9. Syndromic variants of biliary atresia.World journal of pediatric surgery · 2025
    Review
  10. Novel insights into the phenotypic spectrum and pathogenesis of Hardikar syndrome.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. A novel nonsense variant inClinical case reports · 2021
    Article
  17. Correspondence on "De novo variants in MED12 cause X-linked syndromic neurodevelopmental disorders in 18 females" by Polla et al.Genetics in medicine : official journal of the American College of Medical Genetics · 2021
    Article
  18. Article
  19. Review
  20. Genes · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 4 countries.

Dong Li *Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Alanna Strong *Center for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Kaitlyn M ShenCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
David CassimanUniversity Hospitals and University of Leuven, Metabolic Center, Leuven, Belgium.
Maria Van DyckUniversity Hospitals and University of Leuven, Pediatric Nephrology, Leuven, Belgium.
Natalia Duarte LinharesDepartamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.
Eugenia Ribeiro ValadaresCENTRARE-Centro de Referência em fendas orofaciais, Fundação Benjamin Guimarães-Hospital da Baleia, Belo Horizonte, Brazil.
Tiancheng WangCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sergio D J PenaDepartamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.
Jaak JaekenUniversity Hospitals and University of Leuven, Metabolic Center, Leuven, Belgium.
Samantha VerganoDivision of Medical Genetics and Metabolism, Children's Hospital of The King's Daughters, Norfolk, VA, USA.
Elaine ZackaiDivision of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Anne HingDivision of Genetics, Seattle Children's Hospital, Seattle, WA, USA.
Penny ChowDivision of Genetics, Seattle Children's Hospital, Seattle, WA, USA.
Arupa GangulyDepartment of Genetics, The Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Tasja ScholzInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Tatjana BierhalsInstitute of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Deindl PhilippDepartment of Neonatology and Pediatric Intensive Care Medicine, University Children's Hospital, University Medical Center Hamburg Eppendorf, Hamburg, Germany.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Elizabeth BhojCenter for Applied Genomics, The Children's Hospital of Philadelphia, Philadelphia, PA, USA. bhoje@email.chop.edu.ORCID http://orcid.org/0000-0001-5748-3507
Children's Hospital of Philadelphia · USKU Leuven · BEUniversität Hamburg · DESeattle Children's Hospital · USUniversidade Federal de Minas Gerais · BREastern Virginia Medical School · USFundação Hospitalar do Estado de Minas Gerais · BRUniversity of Pennsylvania · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeHardikar syndrome (MIM 612726) is a rare multiple congenital anomaly syndrome characterized by facial clefting, pigmentary retinopathy, biliary anomalies, and intestinal malrotation, but with preserved cognition. Only four patients have been reported previously, and none had a molecular diagnosis. Our objective was to identify the genetic basis of Hardikar syndrome (HS) and expand the phenotypic spectrum of this disorder.

methodsWe performed exome sequencing on two previously reported and five unpublished female patients with a clinical diagnosis of HS. X-chromosome inactivation (XCI) studies were also performed.

resultsWe report clinical features of HS with previously undescribed phenotypes, including a fatal unprovoked intracranial hemorrhage at age 21. We additionally report the discovery of de novo pathogenic nonsense and frameshift variants in MED12 in these seven individuals and evidence of extremely skewed XCI in all patients with informative testing.

conclusionPathogenic missense variants in the X-chromosome gene MED12 have previously been associated with Opitz-Kaveggia syndrome, Lujan syndrome, Ohdo syndrome, and nonsyndromic intellectual disability, primarily in males. We propose a fifth, female-specific phenotype for MED12, and suggest that nonsense and frameshift loss-of-function MED12 variants in females cause HS. This expands the MED12-associated phenotype in females beyond intellectual disability.

Indexed as

Intellectual DisabilityRetinitis PigmentosaX-Linked Intellectual DisabilityAdultCholestasisCleft PalateFemaleGenes, X-LinkedHumansMediator ComplexPhenotypeYoung AdultMED12 protein, humanMediator Complex

Identifiers

PMID33244166
OpenAlexW3108867080

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.