Evidence map›Paper›PMID 33244098›Full record

ArticleScientific reports2020

Application of multi-omics technology for the elucidation of anti-pneumococcal activity of 3-acyl-2-phenylamino-1,4-dihydroquinolin-4-one (APDQ) derivative against Streptococcus pneumoniae.

Sang-Yeop Lee, Hayoung Lee, Sung Ho Yun, Sangmi Jun, Yujeong Lee, Wooyoung Kim, Edmond Changkyun Park, Joonyoung Baek, Yoonna Kwak, Soojin Noh and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Sang-Yeop LeeResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Hayoung LeeResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Sung Ho YunCenter for Research Equipment, Korea Basic Science Institute, Ochang, 28119, South Korea.
Sangmi JunConvergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, 34114, South Korea.
Yujeong LeeConvergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, 34114, South Korea.
Wooyoung KimResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Edmond Changkyun ParkResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Joonyoung BaekResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Yoonna KwakConvergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, 34114, South Korea.
Soojin NohConvergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, 34114, South Korea.
Giwan SeoResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea.
Soojin JangAntibacterial Resistance Research Laboratory, Discovery Biology Department, Institut Pasteur Korea, Seongnam-si, 13488, South Korea.
Chul Min ParkConvergent Research Center for Emerging Virus Infection, Korea Research Institute of Chemical Technology, Daejeon, 34114, South Korea. parkcm@krict.re.kr.
Seung Il KimResearch Center for Bioconvergence Analysis, Korea Basic Science Institute, Ochang, 28119, South Korea. ksi@kbsi.re.kr.
Korea Basic Science Institute · KRKorea Research Institute of Chemical Technology · KRInstitut Pasteur Korea · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus pneumoniae is one of Gram-positive pathogen that causes invasive pneumococcal disease. Nowadays, many S. pneumoniae strains are resistant to commonly used antibiotics such as β-lactams and macrolides. 3-Acyl-2-phenylamino-1,4-dihydroquinolin-4-one (APDQ) derivatives are known as novel chemicals having anti-pneumococcal activity against S. pneumoniae. The underlying mechanism of the anti-pneumococcal activity of this inhibitor remains unknown. Therefore, we tried to find the anti-pneumococcal mechanism of APDQ230122, one of the APDQ derivatives active against S. pneumoniae. We performed transcriptomic analysis (RNA-Seq) and proteomic analysis (LC-MS/MS analysis) to get differentially expressed genes (DEG) and differentially expressed proteins (DEP) of S. pneumoniae 521 treated with sub-inhibitory concentrations of APDQ230122 and elucidated the comprehensive expression changes of genes and proteins using multi-omics analysis. As a result, genes or proteins of peptidoglycan biosynthesis and DNA replication were significantly down-regulated. Electron microscopy analysis revealed that the structure of peptidoglycan was damaged by APDQ230122 in a chemical concentration-dependent manner. Therefore, we suggest peptidoglycan biosynthesis is a major target of APDQ230122. Multi-omics analysis can provide us useful information to elucidate anti-pneumococcal activity of APDQ230122.

Indexed as

Anti-Bacterial AgentsDNA ReplicationDown-RegulationGene ExpressionMicrobial Sensitivity TestsPeptidoglycanProteomicsStreptococcus pneumoniaeTranscriptomeAnti-Bacterial AgentsPeptidoglycan

Identifiers

PMID33244098
PMCPMC7691496
OpenAlexW3109567522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.