Evidence map›Paper›PMID 33244037›Full record

ArticleScientific reports2020

Salt-responsive transcriptome analysis of triticale reveals candidate genes involved in the key metabolic pathway in response to salt stress.

Chaohong Deng, Zhibin Zhang, Guorong Yan, Fan Wang, Lianjia Zhao, Ning Liu, Abudukeyoumu Abudurezike, Yushan Li, Wei Wang, Shubing Shi

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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  10. Time-Course Transcriptome Analysis ofInternational journal of molecular sciences · 2023
    Article
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Chaohong DengCollege of Agronomy, Xinjiang Agricultural University, Urumqi, 830091, China.
Zhibin ZhangState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, 455000, China.
Guorong YanResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Fan WangResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Lianjia ZhaoResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Ning LiuResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Abudukeyoumu AbudurezikeResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Yushan LiResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China.
Wei WangResearch Institute of Crop Germplasm Resources, Xinjiang Academy of Agricultural Sciences, Urumqi, 830091, China. wangweiwlj@163.com.
Shubing ShiCollege of Agronomy, Xinjiang Agricultural University, Urumqi, 830091, China. ssb@xjau.edu.cn.
Xinjiang Academy of Agricultural Sciences · CNMinistry of Agriculture and Rural Affairs · CNCotton Research Institute · CNXinjiang Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Triticale is tolerant of many environmental stresses, especially highly resistant to salt stress. However, the molecular regulatory mechanism of triticale seedlings under salt stress conditions is still unclear so far. In this study, a salt-responsive transcriptome analysis was conducted to identify candidate genes or transcription factors related to salt tolerance in triticale. The root of salt-tolerant triticale cultivars TW004 with salt-treated and non-salt stress at different time points were sampled and subjected to de novo transcriptome sequencing. Total 877,858 uniquely assembled transcripts were identified and most contigs were annotated in public databases including nr, GO, KEGG, eggNOG, Swiss-Prot and Pfam. 59,280, 49,345, and 85,922 differentially expressed uniquely assembled transcripts between salt treated and control triticale root samples at three different time points (C12_vs_T12, C24_vs_T24, and C48_vs_T48) were identified, respectively. Expression profile and functional enrichment analysis of DEGs found that some DEGs were significantly enriched in metabolic pathways related to salt tolerance, such as reduction-oxidation pathways, starch and sucrose metabolism. In addition, several transcription factor families that may be associated with salt tolerance were also identified, including AP2/ERF, NAC, bHLH, WRKY and MYB. Furthermore, 14 DEGs were selected to validate the transcriptome profiles via quantitative RT-PCR. In conclusion, these results provide a foundation for further researches on the regulatory mechanism of triticale seedlings adaptation to salt stress in the future.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantMetabolic Networks and PathwaysOxidation-ReductionPlant RootsSalt StressSalt ToleranceSeedlingsTranscription FactorsTranscriptomeTriticaleTranscription Factors

Identifiers

PMID33244037
PMCPMC7691987
OpenAlexW3106993236

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.