Evidence map›Paper›PMID 33243148›Full record

ArticleBMC infectious diseases2020

The recent trend in mycobacterial strain diversity among extra pulmonary lymph node tuberculosis and their association with drug resistance and the host immunological response in South India.

Shanmugam Sivakumar, Yuvaraj Chandramohan, Gokul Raj Kathamuthu, Gomathi Sekar, Devika Kandhasamy, Venkatesan Padmanaban, Syed Hissar, Srikanth P Tripathy, Ramalingam Bethunaickan, Baskaran Dhanaraj and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Nonadherence Predictors to Tuberculosis Medications among TB Patients in Gambella Region of Ethiopia.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2022
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4 · The record

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5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Shanmugam SivakumarDepartment of Bacteriology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Yuvaraj ChandramohanDepartment of Immunology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Gokul Raj KathamuthuNational Institute of Health -International Center for Excellence in Research - National Institute for Research in Tuberculosis, Chennai, India.
Gomathi SekarDepartment of Bacteriology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Devika KandhasamyDepartment of Bacteriology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Venkatesan PadmanabanDepartment of Immunology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Syed HissarDepartment of Clinical Health Research, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Srikanth P TripathyNational Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Ramalingam BethunaickanDepartment of Immunology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Baskaran DhanarajDepartment of Clinical Health Research, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India.
Subash BabuNational Institute of Health -International Center for Excellence in Research - National Institute for Research in Tuberculosis, Chennai, India.
Uma Devi RanganathanDepartment of Immunology, National Institute for Research in Tuberculosis, Chetpet, Chennai, 600 031, India. Krumadevi@gmail.com.
National Institute of Research in Tuberculosis · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTuberculosis (TB) though primarily affects the lungs it may also affect the other parts of the body and referred as extra pulmonary (EPTB). This study is focused on understanding the genetic diversity and molecular epidemiology of Mycobacterium tuberculosis (M.tb) among tuberculous lymphadenitis (TBL), a form of EPTB patients identified in Chennai, Tamil Nadu.

methodsThe genetic diversity was identified by performing spoligotyping on the M.tb clinical isolates that were recovered from lymph node samples. A total of 71 M.tb isolates were recovered from extra pulmonary lymph node samples and subjected to Drug susceptibility testing and spoligotyping was carried out. In addition, immunological characterization from blood of same individuals from whom M.tb was isolated was carried out between the two major lineages groups East African Indian 3 (EAI3) and non-EAI3 strains by ELISA. The results of spoligotyping patterns were compared with the world Spoligotyping Database of Institute Pasteur de Guadeloupe (SpolDB4).

resultsWe found 41 spoligotype patterns and their associated lineages. Out of 41 spoligotype pattern, only 22 patterns are available in the spoldB4 database with Spoligotype international Type (SIT) number and remaining patterns were orphan strains without SIT number. The most predominant spoligotype lineage that was found in lymph node sample in this region of India was EAI (36), followed by central Asian strain (CAS) (6), T1 (5), Beijing (3), Latin American & Mediterranean (LAM) (2), U (1), X2 (1) and orphan (22). In addition to EAI, CAS and Beijing, our study identified the presence of orphan and unique spoligotyping patterns in Chennai region. We observed six drug resistant isolates. Out of six drug resistant isolates, four were resistant to isoniazid drug and associated with EAI family. Moreover, we observed increased levels of type 2 and type 17 cytokine profiles between EAI3 and non-EAI family, infected individuals.

conclusionsThe study confirms that EAI lineage to be the most predominant lineages in EPTB patients with lymphadenitis and were found to have increased type 1 and type 17 proinflammatory cytokine profiles.

Indexed as

Drug ResistanceGenetic VariationAnti-Bacterial AgentsGenotypeHumansIndiaIsoniazidLymph NodesMicrobial Sensitivity TestsMolecular EpidemiologyMycobacterium tuberculosisTuberculosis, Lymph NodeAnti-Bacterial AgentsIsoniazidExtra pulmonary tuberculosisLymph nodeMycobacterial lineageMycobacterium tuberculosisSpoligotypingTh1 and Th17 cytokines

Identifiers

PMID33243148
PMCPMC7690019
OpenAlexW3106832146

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.