Evidence map›Paper›PMID 33240273›Full record

ArticleFrontiers in immunology2020

How Ancestry Influences the Chances of Finding Unrelated Donors: An Investigation in Admixed Brazilians.

Kelly Nunes, Vitor R C Aguiar, Márcio Silva, Alexandre C Sena, Danielli C M de Oliveira, Carla L Dinardo, Fernanda S G Kehdy, Eduardo Tarazona-Santos, Vanderson G Rocha, Anna Barbara F Carneiro-Proietti and 9 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Observational
  12. How HLA diversity is apportioned: influence of selection and relevance to transplantation.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  13. Observational
  14. Increasing access to allogeneic hematopoietic cell transplant: an international perspective.Hematology. American Society of Hematology. Education Program · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 2 countries.

Kelly NunesLaboratory of Evolutionary Genetics, Institute of Biosciences, University of São Paulo, São Paulo, Brazil.
Vitor R C AguiarLaboratory of Evolutionary Genetics, Institute of Biosciences, University of São Paulo, São Paulo, Brazil.
Márcio SilvaInstituto de Matemática e Estatística, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil.
Alexandre C SenaInstituto de Matemática e Estatística, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil.
Danielli C M de OliveiraRegistro Nacional de Doadores Voluntários de Medula Óssea-REDOME, Instituto Nacional do Câncer, Ministério da Saúde, Rio de Janeiro, Brazil.
Carla L DinardoFundação Pró Sangue, Hemocentro de São Paulo, São Paulo, Brazil.
Fernanda S G KehdyInstituto Oswaldo Cruz, Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
Eduardo Tarazona-SantosDepartamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.
Vanderson G RochaFundação Pró Sangue, Hemocentro de São Paulo, São Paulo, Brazil.
Anna Barbara F Carneiro-ProiettiFundação Hemominas, Belo Horizonte, Brazil.
Paula LoureiroFundação Hemominas, Belo Horizonte, Brazil.
Miriam V Flor-ParkHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, Instituto da Criança, São Paulo, Brazil.
Claudia MaximoFundação Hemorio, Rio de Janeiro, Brazil.
Shannon KellyEpidemiology, Vitalant Research Institute, San Francisco, CA, United States.
Brian CusterEpidemiology, Vitalant Research Institute, San Francisco, CA, United States.
Bruce S WeirDepartment of Biostatistics, University of Washington, Seattle, WA, United States.
Ester C SabinoInstituto de Medicina Tropical, Departamento de Moléstias Infecciosas e Parasitárias da Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.
Luís Cristóvão PortoLaboratório de Histocompatibilidade e Criopreservação, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil.
Diogo MeyerLaboratory of Evolutionary Genetics, Institute of Biosciences, University of São Paulo, São Paulo, Brazil.
Universidade de São Paulo · BRUniversidade do Estado do Rio de Janeiro · BRFundação Centro de Hematologia e Hemoterapia de Minas Gerais · BRFundação Pró-Sangue Hemocentro de São Paulo · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRFundação Oswaldo Cruz · BRHemorio · BRMinistério da Saúde · BRPacific Research Institute · USUniversidade Federal de Minas Gerais · BRUniversity of Washington · USVitalant · US

Funding

Theoretical Population Genetics SupplementR01GM075091 · NIGMS · UNIVERSITY OF WASHINGTON · PI WEIR, BRUCE S. · 2006 to 2020
$4.7M
NHLBI NIH HHS HHSN268201100007INIGMS NIH HHS R01 GM075091
6 · The paper itself

Abstract

A match of HLA loci between patients and donors is critical for successful hematopoietic stem cell transplantation. However, the extreme polymorphism of HLA loci - an outcome of millions of years of natural selection - reduces the chances that two individuals will carry identical combinations of multilocus HLA genotypes. Further, HLA variability is not homogeneously distributed throughout the world: African populations on average have greater variability than non-Africans, reducing the chances that two unrelated African individuals are HLA identical. Here, we explore how self-identification (often equated with "ethnicity" or "race") and genetic ancestry are related to the chances of finding HLA compatible donors in a large sample from Brazil, a highly admixed country. We query REDOME, Brazil's Bone Marrow Registry, and investigate how different criteria for identifying ancestry influence the chances of finding a match. We find that individuals who self-identify as "Black" and "Mixed" on average have lower chances of finding matches than those who self-identify as "White" (up to 57% reduction). We next show that an individual's African genetic ancestry, estimated using molecular markers and quantified as the proportion of an individual's genome that traces its ancestry to Africa, is strongly associated with reduced chances of finding a match (up to 60% reduction). Finally, we document that the strongest reduction in chances of finding a match is associated with having an MHC region of exclusively African ancestry (up to 75% reduction). We apply our findings to a specific condition, for which there is a clinical indication for transplantation: sickle-cell disease. We show that the increased African ancestry in patients with this disease leads to reduced chances of finding a match, when compared to the remainder of the sample, without the condition. Our results underscore the influence of ancestry on chances of finding compatible HLA matches, and indicate that efforts guided to increasing the African component of registries are necessary.

Indexed as

Anemia, Sickle CellBlack PeopleBone MarrowBone Marrow TransplantationBrazilEthnicityGene FrequencyGenotypeHematopoietic Stem Cell TransplantationHistocompatibility TestingHLA AntigensHumansPolymorphism, GeneticRegistriesUnrelated DonorsWhite PeopleHLA AntigensadmixtureBrazilgenetic ancestryhematopoietic stem cell transplantationHLAMHC

Identifiers

PMID33240273
PMCPMC7677137
OpenAlexW3096163284

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.