Evidence map›Paper›PMID 33239452›Full record

ArticleJournal of virology2021

Structure and dsRNA-binding activity of the Birnavirus Drosophila X Virus VP3 protein.

Diego S Ferrero, Idoia Busnadiego, Damià Garriga, Pablo Guerra, María Teresa Martín, Leonor Kremer, Isabel Usón, José Francisco Rodriguez, Nuria Verdaguer

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Diego S FerreroStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC, Baldiri i Reixac 15, 08028-Barcelona.
Idoia BusnadiegoCentro Nacional de Biotecnología, CSIC, Calle Darwin n° 3, 28049-Madrid.
Damià GarrigaStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC, Baldiri i Reixac 15, 08028-Barcelona.
Pablo GuerraStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC, Baldiri i Reixac 15, 08028-Barcelona.
María Teresa MartínCentro Nacional de Biotecnología, CSIC, Calle Darwin n° 3, 28049-Madrid.
Leonor KremerCentro Nacional de Biotecnología, CSIC, Calle Darwin n° 3, 28049-Madrid.
Isabel UsónStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC, Baldiri i Reixac 15, 08028-Barcelona.
José Francisco RodriguezCentro Nacional de Biotecnología, CSIC, Calle Darwin n° 3, 28049-Madrid. nvmcri@ibmb.csic.es jfrodrig@cnb.csic.es.
Nuria VerdaguerStructural Biology Unit, Institut de Biologia Molecular de Barcelona, CSIC, Baldiri i Reixac 15, 08028-Barcelona. nvmcri@ibmb.csic.es jfrodrig@cnb.csic.es.ORCID https://orcid.org/0000-0001-8826-7129
Centro Nacional de Biotecnología · ESInstitut de Biologia Molecular de Barcelona · ESALBA Synchrotron (Spain) · ESInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Birnavirus multifunctional protein VP3 plays an essential role coordinating the virus life cycle, interacting with the capsid protein VP2, with the RNA-dependent RNA polymerase VP1 and with the dsRNA genome. Furthermore, the role of this protein in controlling host cell responses triggered by dsRNA and preventing gene silencing has been recently demonstrated. Here we report the X-ray structure and dsRNA-binding activity of the N-terminal domain of Drosophila X virus (DXV) VP3. The domain folds in a bundle of three α-helices and arranges as a dimer, exposing to the surface a well-defined cluster of basic residues. Site directed mutagenesis combined with Electrophoretic Mobility Shift Assays (EMSA) and Surface Plasmon Resonance (SPR) revealed that this cluster, as well as a flexible and positively charged region linking the first and second globular domains of DXV VP3, are essential for dsRNA-binding. Also, RNA silencing studies performed in insect cell cultures confirmed the crucial role of this VP3 domain for the silencing suppression activity of the protein.

Identifiers

PMID33239452
PMCPMC7851550
OpenAlexW3107525172

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.