Evidence map›Paper›PMID 33237833›Full record

ArticleMolecular biology of the cell2021

Elevating PI3P drives select downstream membrane trafficking pathways.

Noah Steinfeld, Vikramjit Lahiri, Anna Morrison, Shree Padma Metur, Daniel J Klionsky, Lois S Weisman

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

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  16. Review
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  18. Deliver on Time or Pay the Fine: Scheduling in Membrane Trafficking.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Noah SteinfeldProgram in Cellular and Molecular Biology, University of Michigan, Ann Arbor, MI 48109.
Vikramjit LahiriLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Anna MorrisonLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Shree Padma MeturLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Daniel J KlionskyLife Sciences Institute, University of Michigan, Ann Arbor, MI 48109.
Lois S WeismanProgram in Cellular and Molecular Biology, University of Michigan, Ann Arbor, MI 48109.
University of Michigan · US

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
The mechanism and regulation of autophagyR35GM131919 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DANIEL J. KLIONSKY · 2019 to 2026
$6.4M
Regulation of myosin V interaction with cargo-Equipment SupplementR01GM062261 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Lois S Weisman · 2001 to 2026
$5.8M
Phosphoinositide signaling: novel potential targets for Huntington diseaseR01NS099340 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WEISMAN, LOIS S · 2017 to 2021
$2.7M
NIGMS NIH HHS R01 GM062261NIGMS NIH HHS R35 GM131919NIGMS NIH HHS T32 GM007315NINDS NIH HHS R01 NS099340
6 · The paper itself

Abstract

Phosphoinositide signaling lipids are essential for several cellular processes. The requirement for a phosphoinositide is conventionally studied by depleting the corresponding lipid kinase. However, there are very few reports on the impact of elevating phosphoinositides. That phosphoinositides are dynamically elevated in response to stimuli suggests that, in addition to being required, phosphoinositides drive downstream pathways. To test this hypothesis, we elevated the levels of phosphatidylinositol-3-phosphate (PI3P) by generating hyperactive alleles of the yeast phosphatidylinositol 3-kinase, Vps34. We find that hyperactive Vps34 drives certain pathways, including phosphatidylinositol-3,5-bisphosphate synthesis and retrograde transport from the vacuole. This demonstrates that PI3P is rate limiting in some pathways. Interestingly, hyperactive Vps34 does not affect endosomal sorting complexes required for transport (ESCRT) function. Thus, elevating PI3P does not always increase the rate of PI3P-dependent pathways. Elevating PI3P can also delay a pathway. Elevating PI3P slowed late steps in autophagy, in part by delaying the disassembly of autophagy proteins from mature autophagosomes as well as delaying fusion of autophagosomes with the vacuole. This latter defect is likely due to a more general defect in vacuole fusion, as assessed by changes in vacuole morphology. These studies suggest that stimulus-induced elevation of phosphoinositides provides a way for these stimuli to selectively regulate downstream processes.

Indexed as

Amino AcidsAutophagyCell MembraneClass III Phosphatidylinositol 3-KinasesEndosomal Sorting Complexes Required for TransportMembrane FusionMutationPhosphatidylinositol PhosphatesProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsVacuolesAmino AcidsClass III Phosphatidylinositol 3-KinasesEndosomal Sorting Complexes Required for Transportphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesSaccharomyces cerevisiae Proteins

Identifiers

PMID33237833
PMCPMC8120694
OpenAlexW3110449139

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.