Evidence map›Paper›PMID 33234140›Full record

ArticleBMC microbiology2020

First isolation and whole-genome sequencing of a Shewanella algae strain from a swine farm in Brazil.

Vinicius Buiatte de Andrade Alves, Eneas Carvalho, Paloma Alonso Madureira, Elizangela Domenis Marino, Andreia Cristina Nakashima Vaz, Ana Maria Centola Vidal, Vera Letticie de Azevedo Ruiz

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Case Report: A Case of Sepsis due to Shewanella algae Infection in the Colombian Caribbean.The American journal of tropical medicine and hygiene · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Vinicius Buiatte de Andrade AlvesUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil. vub172@psu.edu.ORCID 0000-0002-4817-9391
Eneas CarvalhoInstituto Butantan, Laboratory of Bacteriology, 1500 Vital Brasil Av., Butantan, Sao Paulo, SP, 05503-900, Brazil.
Paloma Alonso MadureiraUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil.
Elizangela Domenis MarinoUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil.
Andreia Cristina Nakashima VazUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil.
Ana Maria Centola VidalUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil.
Vera Letticie de Azevedo RuizUniversidade de Sao Paulo, Faculty of Animal Science and Food Engineering, Laboratorio de Doenças Infectoparasitarias de Animais Domesticos, 225 Duque de Caxias Av., Jardim Elite, Pirassununga, SP, 13635-900, Brazil.
Universidade de São Paulo · BRInstituto Butantan · BR

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 88882.461730/2019-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2017/22184-7 and 2019/19473-2
6 · The paper itself

Abstract

backgroundInfections caused by Shewanella spp. have been increasingly reported worldwide. The advances in genomic sciences have enabled better understanding about the taxonomy and epidemiology of this agent. However, the scarcity of DNA sequencing data is still an obstacle for understanding the genus and its association with infections in humans and animals.

resultsIn this study, we report the first isolation and whole-genome sequencing of a Shewanella algae strain from a swine farm in Brazil using the boot sock method, as well as the resistance profile of this strain to antimicrobials. The isolate was first identified as Shewanella putrefaciens, but after whole-genome sequencing it showed greater similarity with Shewanella algae. The strain showed resistance to 46.7% of the antimicrobials tested, and 26 resistance genes were identified in the genome.

conclusionsThis report supports research made with Shewanella spp. and gives a step forward for understanding its taxonomy and epidemiology. It also highlights the risk of emerging pathogens with high resistance to antimicrobial formulas that are important to public health.

Indexed as

FarmsAnimalsAnti-Bacterial AgentsBrazilDNA, BacterialDrug Resistance, Multiple, BacterialEnvironmental MicrobiologyGenome, BacterialMicrobial Sensitivity TestsPhylogenyRNA, Ribosomal, 16SShewanellaSwineVirulence FactorsAnti-Bacterial AgentsDNA, BacterialRNA, Ribosomal, 16SVirulence FactorsGenomeResistanceShewanellaSwineTaxonomy

Identifiers

PMID33234140
PMCPMC7687808
OpenAlexW3109018715

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.