Evidence map›Paper›PMID 33233417›Full record

ArticleInternational journal of molecular sciences2020

Early Transcriptomic Response to OxLDL in Human Retinal Pigment Epithelial Cells.

Diwa Koirala, Sarka Beranova-Giorgianni, Francesco Giorgianni

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Application of Photodynamic Therapy in Cardiology.International journal of molecular sciences · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Oxidized LDLs as Signaling Molecules.Antioxidants (Basel, Switzerland) · 2021
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Diwa KoiralaDepartment of Pharmaceutical Sciences; The University of Tennessee Health Science Center, Memphis, TN 38163, USA.ORCID 0000-0001-7950-0259
Sarka Beranova-GiorgianniDepartment of Pharmaceutical Sciences; The University of Tennessee Health Science Center, Memphis, TN 38163, USA.
Francesco GiorgianniDepartment of Pharmaceutical Sciences; The University of Tennessee Health Science Center, Memphis, TN 38163, USA.
University of Tennessee Health Science Center · US

Funding

BrightFocus Foundation M2016068Retina Research Foundation NA
6 · The paper itself

Abstract

In the sub-retinal pigment epithelium (sub-RPE) space of the aging macula, deposits of oxidized phospholipids, oxidized derivatives of cholesterol and associated oxidized low-density lipoproteins (OxLDL) are considered contributors to the onset and development of age-related macular degeneration (AMD). We investigated the gene expression response of a human-derived RPE cell line exposed for short periods of time to non-cytotoxic levels of OxLDL or LDL. In our cell model, treatment with OxLDL, but not LDL, generated an early gene expression response which affected more than 400 genes. Gene pathway analysis unveiled gene networks involved in the regulation of various cellular functions, including acute response to oxidative stress via up-regulation of antioxidative gene transcripts controlled by nuclear factor erythroid-2 related factor 2 (NRF2), and up-regulation of aryl hydrocarbon receptor-controlled detoxifying gene transcripts. In contrast, circadian rhythm-controlling genes and genes involved in lipid metabolism were strongly down-regulated. Treatment with low-density lipoprotein (LDL) did not induce the regulation of these pathways. These findings show that RPE cells are able to selectively respond to the oxidized forms of LDL via the up-regulation of gene pathways involved in molecular mechanisms that minimize cellular oxidative damage, and the down-regulation of the expression of genes that regulate the intracellular levels of lipids and lipid derivatives. The effect on genes that control the cellular circadian rhythm suggests that OxLDL might also disrupt the circadian clock-dependent phagocytic activity of the RPE. The data reveal a complex cellular response to a highly heterogeneous oxidative stress-causing agent such as OxLDL commonly present in drusen formations.

Indexed as

AgingCell LineCholesterolCholesterol, LDLGene Expression RegulationHumansLipoproteins, LDLMacula LuteaMacular DegenerationNF-E2-Related Factor 2Oxidative StressPhospholipidsReceptors, Aryl HydrocarbonRetinal Pigment EpitheliumTranscriptomeCholesterolCholesterol, LDLLipoproteins, LDLNFE2L2 protein, humanNF-E2-Related Factor 2oxidized low density lipoproteinPhospholipidsReceptors, Aryl Hydrocarbondrusenoxidative stressoxidized LDLretinal pigment epitheliumtranscriptome

Identifiers

PMID33233417
PMCPMC7700619
OpenAlexW3107723154

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.