Evidence map›Paper›PMID 33232677›Full record

ArticleAmerican journal of human genetics2020

Heterozygous Variants in KDM4B Lead to Global Developmental Delay and Neuroanatomical Defects.

Anna R Duncan, Antonio Vitobello, Stephan C Collins, Valerie E Vancollie, Christopher J Lelliott, Lance Rodan, Jiahai Shi, Ann R Seman, Emanuele Agolini, Antonio Novelli and 20 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Kdm4d mutant mice show impaired sperm motility and subfertility.The Journal of reproduction and development · 2024
    Article
  9. Article
  10. Review
  11. Identification of the DNA methylation signature of Mowat-Wilson syndrome.European journal of human genetics : EJHG · 2024
    Article
  12. Article
  13. Article
  14. Review
  15. KDM4 Demethylases: Structure, Function, and Inhibitors.Advances in experimental medicine and biology · 2023
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 14 institutions in 7 countries.

Anna R DuncanDivision of Newborn Medicine, Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA.
Antonio VitobelloUnité Fonctionnelle Innovation en Diagnostic Génomique des Maladies Rares, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; INSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France; Centre de Référence Maladies Rares « Anomalies du Développement et Syndromes Malformatifs », Centre de Génétique, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France.
Stephan C CollinsINSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France.
Valerie E VancollieWellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Christopher J LelliottWellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Lance RodanDivision of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA; Department of Neurology, Boston Children's Hospital, Boston, MA 02115, USA.
Jiahai ShiDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, Hong Kong SAR.
Ann R SemanDivision of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA.
Emanuele AgoliniLaboratory of Medical Genetics Unit, Bambino Gesù Children's Hospital, 00146 Rome, Italy.
Antonio NovelliLaboratory of Medical Genetics Unit, Bambino Gesù Children's Hospital, 00146 Rome, Italy.
Paolo PronteraMedical Genetics Unit, Maternal-Infantile Department, Hospital and University of Perugia, 06129 Perugia, Italy.
Maria J Guillen SacotoClinical Genomics Program, GeneDx, Gaithersburg, MD 20877, USA.
Teresa Santiago-SimClinical Genomics Program, GeneDx, Gaithersburg, MD 20877, USA.
Aurélien TrimouilleDepartment of Medical Genetics, University Hospital of Bordeaux, 33076 Bordeaux, France.
Cyril GoizetReference Center for Neurogenetics, Department of Medical Genetics, University Hospital of Bordeaux, 33076 Bordeaux, France.
Mathilde NizonCHU Nantes, Genetic Medical Department, 44093 Nantes, France.
Ange-Line BruelUnité Fonctionnelle Innovation en Diagnostic Génomique des Maladies Rares, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; INSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France.
Christophe PhilippeUnité Fonctionnelle Innovation en Diagnostic Génomique des Maladies Rares, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; INSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France.
Patricia E GrantDivision of Newborn Medicine, Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA; Department of Radiology, Boston Children's Hospital, Boston, MA 02115, USA.
Monica H WojcikDivision of Newborn Medicine, Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA; Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA.
Joan StolerDivision of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA.
Casie A GenettiDivision of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA; The Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, USA.
Marieke F van DoorenDepartment of Clinical Genetics, Erasmus MC University Medical Center Rotterdam, PO Box 2040, 3000 CA Rotterdam, the Netherlands.
Saskia M MaasAmsterdam UMC, University of Amsterdam, Department of Clinical Genetics, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands.
Marielle AldersAmsterdam UMC, University of Amsterdam, Department of Clinical Genetics, Meibergdreef 9, 1105 AZ Amsterdam, the Netherlands.
Laurence FaivreUnité Fonctionnelle Innovation en Diagnostic Génomique des Maladies Rares, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; INSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France; Centre de Référence Maladies Rares « Anomalies du Développement et Syndromes Malformatifs », Centre de Génétique, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France.
Arthur SorlinUnité Fonctionnelle Innovation en Diagnostic Génomique des Maladies Rares, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; INSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France; Centre de Référence Maladies Rares « Anomalies du Développement et Syndromes Malformatifs », Centre de Génétique, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France; Centre de Référence Maladies Rares « Déficiences Intellectuelles de Causes Rares », Centre de Génétique, FHU-TRANSLAD, CHU Dijon Bourgogne, 21000 Dijon, France.
Grace YoonDivisions of Neurology and Clinical and Metabolic Genetics, Department of Paediatrics, The Hospital for Sick Children, University of Toronto, Toronto, ON M5G 1X8, Canada.
Binnaz YalcinINSERM UMR1231 GAD, Université de Bourgogne Franche-Comté, 21000 Dijon, France. Electronic address: binnaz.yalcin@inserm.fr.
Pankaj B AgrawalDivision of Newborn Medicine, Department of Pediatrics, Boston Children's Hospital, Boston, MA 02115, USA; Division of Genetics and Genomics, Boston Children's Hospital, Boston, MA 02115, USA; The Manton Center for Orphan Disease Research, Boston Children's Hospital, Boston, MA 02115, USA. Electronic address: pagrawal@enders.tch.harvard.edu.
Boston Children's Hospital · USInserm · FRBambino Gesù Children's Hospital · ITUniversité de Bourgogne · FRWellcome Sanger Institute · GBAmsterdam University Medical Centers · NLCentre Hospitalier Universitaire Dijon Bourgogne · FRCity University of Hong Kong · HKErasmus MC · NLGénétique Médicale & Génomique Fonctionelle · FRSickKids Foundation · CAUniversité de Bordeaux · FRUniversity of Amsterdam · NLUniversity of Perugia · IT

Funding

Neonatal Research Training ProgramT32HD098061 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Stella Kourembanas, Martha C. Sola-Visner · 2019 to 2026
$4.0M
SPEG is Critical in Skeletal Muscle Development and FunctionR01AR068429 · NIAMS · BOSTON CHILDREN'S HOSPITAL · PI AGRAWAL, PANKAJ B · 2015 to 2019
$1.9M
NIAMS NIH HHS R01 AR068429NICHD NIH HHS T32 HD098061Wellcome Trust
6 · The paper itself

Abstract

KDM4B is a lysine-specific demethylase with a preferential activity on H3K9 tri/di-methylation (H3K9me3/2)-modified histones. H3K9 tri/di-demethylation is an important epigenetic mechanism responsible for silencing of gene expression in animal development and cancer. However, the role of KDM4B on human development is still poorly characterized. Through international data sharing, we gathered a cohort of nine individuals with mono-allelic de novo or inherited variants in KDM4B. All individuals presented with dysmorphic features and global developmental delay (GDD) with language and motor skills most affected. Three individuals had a history of seizures, and four had anomalies on brain imaging ranging from agenesis of the corpus callosum with hydrocephalus to cystic formations, abnormal hippocampi, and polymicrogyria. In mice, lysine demethylase 4B is expressed during brain development with high levels in the hippocampus, a region important for learning and memory. To understand how KDM4B variants can lead to GDD in humans, we assessed the effect of KDM4B disruption on brain anatomy and behavior through an in vivo heterozygous mouse model (Kdm4b

Indexed as

Genetic VariationAnimalsBrainDevelopmental DisabilitiesEpigenesis, GeneticFemaleHeterozygoteHippocampusHistonesHumansJumonji Domain-Containing Histone DemethylasesMagnetic Resonance ImagingMaleMethylationMiceNervous System MalformationsHistonesJumonji Domain-Containing Histone DemethylasesKDM4B protein, humanKdm4b protein, mouseagenesis of the corpus callosumdysmorphic hippocampiglobal developmental delayheterozygous variantintellectual disabilityJMJD2BKDM4Bneurodevelopmental disorder

Identifiers

PMID33232677
PMCPMC7820620
OpenAlexW3108111879

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.