Evidence map›Paper›PMID 33232322›Full record

ArticlePLoS biology2020

Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging.

Yong Qian, Danielle M Orozco Cosio, Kiryl D Piatkevich, Sarah Aufmkolk, Wan-Chi Su, Orhan T Celiker, Anne Schohl, Mitchell H Murdock, Abhi Aggarwal, Yu-Fen Chang and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 97 citations in OpenAlex.

  1. Review
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  6. Review
  7. Article
  8. CaBLAM! A high-contrast bioluminescent CabioRxiv : the preprint server for biology · 2025
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  14. Review
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  16. Highly efficient CaOrganic & biomolecular chemistry · 2024
    Article
  17. Chemigenetic Far-Red Labels and CaJournal of the American Chemical Society · 2024
    Article
  18. Review
  19. Review
  20. WidefieldNeurophotonics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 4 countries.

Yong QianDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID 0000-0001-7849-9022
Danielle M Orozco CosioDepartments of Biological Engineering, Media Arts and Sciences, Brain and Cognitive Sciences, McGovern Institute, Koch Institute, Center for Neurobiological Engineering, MIT, and Howard Hughes Medical Institute, Cambridge, Massachusetts, United States of America.
Kiryl D PiatkevichDepartments of Biological Engineering, Media Arts and Sciences, Brain and Cognitive Sciences, McGovern Institute, Koch Institute, Center for Neurobiological Engineering, MIT, and Howard Hughes Medical Institute, Cambridge, Massachusetts, United States of America.
Sarah AufmkolkMontreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-0745-6022
Wan-Chi SuLumiSTAR Biotechnology, Nangang District, Taipei City, Taiwan.
Orhan T CelikerDepartments of Biological Engineering, Media Arts and Sciences, Brain and Cognitive Sciences, McGovern Institute, Koch Institute, Center for Neurobiological Engineering, MIT, and Howard Hughes Medical Institute, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-5044-0296
Anne SchohlMontreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-6828-5490
Mitchell H MurdockDepartments of Biological Engineering, Media Arts and Sciences, Brain and Cognitive Sciences, McGovern Institute, Koch Institute, Center for Neurobiological Engineering, MIT, and Howard Hughes Medical Institute, Cambridge, Massachusetts, United States of America.
Abhi AggarwalHoward Hughes Medical Institute, Janelia Research Campus, Ashburn, Virginia, United States of America.
Yu-Fen ChangLumiSTAR Biotechnology, Nangang District, Taipei City, Taiwan.
Paul W WisemanDepartment of Chemistry, McGill University, Montreal, Quebec, Canada.ORCID 0000-0002-5732-2858
Edward S RuthazerMontreal Neurological Institute-Hospital, Department of Neurology and Neurosurgery, McGill University, Montreal, Quebec, Canada.ORCID 0000-0003-0452-3151
Edward S BoydenDepartments of Biological Engineering, Media Arts and Sciences, Brain and Cognitive Sciences, McGovern Institute, Koch Institute, Center for Neurobiological Engineering, MIT, and Howard Hughes Medical Institute, Cambridge, Massachusetts, United States of America.
Robert E CampbellDepartment of Chemistry, University of Alberta, Edmonton, Alberta, Canada.ORCID 0000-0003-0604-092X
Howard Hughes Medical Institute · USMontreal Neurological Institute and Hospital · CAMcGill University · CAUniversity of Alberta · CA

Funding

Novel Platforms for Systematic Optical Control of Complex Neural Circuits In VivoR01DA029639 · NIDA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2010 to 2023
$6.7M
High-Performance Imaging Through Scattering Living TissueR01DA045549 · NIDA · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BOYDEN, EDWARD S. · 2017 to 2020
$3.5M
Multidimensional Optimization of Voltage Indicators for In Vivo Neural Activity ImagingR01MH122971 · NIMH · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI HAN, XUE · 2020 to 2024
$3.4M
Northern Lights collaboration for better 2-photon probesU01NS094246 · NINDS · MONTANA STATE UNIVERSITY - BOZEMAN · PI CAMPBELL, ROBERT E., DROBIZHEV, MIKHAIL · 2015 to 2017
$2.0M
Opto-Crown: Transparent skulls with embedded optics for cortex-wide cellular resolution imaging in freely moving miceRF1NS113287 · NINDS · UNIVERSITY OF MINNESOTA · PI BOYDEN, EDWARD S., KODANDARAMAIAH, SUHASA B · 2019 to 2019
$2.0M
Development of Protein-based Voltage ProbesU01NS090565 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI PIERIBONE, VINCENT A · 2014 to 2016
$1.7M
CIHR FDN-143238CIHR FS-154310CIHR MOP-123514Howard Hughes Medical InstituteNIDA NIH HHS R01 DA029639NIDA NIH HHS R01 DA045549NIMH NIH HHS R01 MH122971NINDS NIH HHS RF1 NS113287NINDS NIH HHS U01 NS090565NINDS NIH HHS U01 NS094246
6 · The paper itself

Abstract

Near-infrared (NIR) genetically encoded calcium ion (Ca2+) indicators (GECIs) can provide advantages over visible wavelength fluorescent GECIs in terms of reduced phototoxicity, minimal spectral cross talk with visible light excitable optogenetic tools and fluorescent probes, and decreased scattering and absorption in mammalian tissues. Our previously reported NIR GECI, NIR-GECO1, has these advantages but also has several disadvantages including lower brightness and limited fluorescence response compared to state-of-the-art visible wavelength GECIs, when used for imaging of neuronal activity. Here, we report 2 improved NIR GECI variants, designated NIR-GECO2 and NIR-GECO2G, derived from NIR-GECO1. We characterized the performance of the new NIR GECIs in cultured cells, acute mouse brain slices, and Caenorhabditis elegans and Xenopus laevis in vivo. Our results demonstrate that NIR-GECO2 and NIR-GECO2G provide substantial improvements over NIR-GECO1 for imaging of neuronal Ca2+ dynamics.

Indexed as

AnimalsBrainCaenorhabditis elegansCalciumFluorescent DyesGreen Fluorescent ProteinsHeLa CellsHumansIndicators and ReagentsLuminescent ProteinsMiceMyocytes, CardiacNeuronsOptical ImagingOptogeneticsProtein EngineeringCalciumFluorescent DyesGreen Fluorescent ProteinsIndicators and ReagentsLuminescent Proteins

Identifiers

PMID33232322
PMCPMC7723245
OpenAlexW3107608927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.