Evidence map›Paper›PMID 33231927›Full record

ArticleMolecular plant pathology2021

Badnaviruses and banana genomes: a long association sheds light on Musa phylogeny and origin.

Matthieu Chabannes, Marc Gabriel, Abderrahmane Aksa, Serge Galzi, Jean-François Dufayard, Marie-Line Iskra-Caruana, Emmanuelle Muller

Abstract read
In one paragraph

Article in Molecular plant pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Diversity of Improved Diploids and Commercial Triploids fromCurrent issues in molecular biology · 2024
    Article
  6. Article
  7. Article
  8. Emerging and Re-Emerging Diseases Caused by Badnaviruses.Pathogens (Basel, Switzerland) · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Matthieu ChabannesCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.ORCID 0000-0001-5754-5982
Marc GabrielCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.
Abderrahmane AksaCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.
Serge GalziCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.
Jean-François DufayardCIRAD, UMR AGAP, University of Montpellier, CIRAD, INRA, Montpellier SupAgro, Montpellier, France.
Marie-Line Iskra-CaruanaCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.ORCID 0000-0003-4486-2449
Emmanuelle MullerCIRAD, UMR BGPI, University of Montpellier, Montpellier SupAgro, Montpellier, France.ORCID 0000-0003-3292-4809

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Badnaviruses are double-stranded DNA pararetroviruses of the family Caulimoviridae. Badnaviral sequences found in banana are distributed over three main clades of the genus Badnavirus and exhibit wide genetic diversity. Interestingly, the nuclear genome of many plants, including banana, is invaded by numerous badnaviral sequences although badnaviruses do not require an integration step to replicate, unlike animal retroviruses. Here, we confirm that banana streak viruses (BSVs) are restricted to clades 1 and 3. We also show that only BSVs from clade 3 encompassing East African viral species are not integrated into Musa genomes, unlike BSVs from clade 1. Finally, we demonstrate that sequences from clade 2 are definitively integrated into Musa genomes with no evidence of episomal counterparts; all are phylogenetically distant from BSVs known to date. Using different molecular approaches, we dissected the coevolution between badnaviral sequences of clade 2 and banana by comparing badnavirus integration patterns across a banana sampling representing major Musa speciation events. Our data suggest that primary viral integrations occurred millions of years ago in banana genomes under different possible scenarios. Endogenous badnaviral sequences can be used as powerful markers to better characterize the Musa phylogeny, narrowing down the likely geographical origin of the Musa ancestor.

Indexed as

BadnavirusBiological CoevolutionBlotting, SouthernDNA, ViralGenome, PlantMusaPhylogenyPolymerase Chain ReactionUgandaVirus IntegrationDNA, ViralBadnavirusbanana streak virusendogenous pararetrovirushost and virus coevolutionMusa phylogeny

Identifiers

PMID33231927
PMCPMC7814968

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.