Evidence map›Paper›PMID 33231169›Full record

ArticleeLife2020

COVID-19 research risks ignoring important host genes due to pre-established research patterns.

Thomas Stoeger, Luís A Nunes Amaral

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
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  5. A graph theoretical approach to experimental prioritization in genome-scale investigations.Mammalian genome : official journal of the International Mammalian Genome Society · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Thomas StoegerSuccessful Clinical Response in Pneumonia Therapy (SCRIPT) Systems Biology Center, Northwestern University, Evanston, United States.ORCID 0000-0002-5540-4278
Luís A Nunes AmaralSuccessful Clinical Response in Pneumonia Therapy (SCRIPT) Systems Biology Center, Northwestern University, Evanston, United States.ORCID 0000-0002-3762-789X

Funding

Technology CoreU19AI135964 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JUSTIN B. STARREN · 2018 to 2026
$24.7M
AIDS Malignancies Training and Research International Program (AMTRIP)D43TW010354 · FIC · UNIVERSITY OF NEBRASKA LINCOLN · PI Chipepo Kankasa, Charles Wood · 2016 to 2026
$2.8M
Integrative Multi-Scale Systems Analysis of Gene-Expression-Driven Aging MorbidityR00AG068544 · NIA · NORTHWESTERN UNIVERSITY · PI Thomas Stoeger · 2024 to 2026
$720k
Integrative Multi-Scale Systems Analysis of Gene-Expression-Driven Aging Morbidity - SupplementK99AG068544 · NIA · NORTHWESTERN UNIVERSITY · PI STOEGER, THOMAS · 2020 to 2022
$280k
Air Force Office of Scientific Research FA9550-19-1-0354National Institute of Allergy and Infectious Diseases U19AI135964National Science Foundation 1956338NIAID NIH HHS U19 AI135964NIA NIH HHS K99 AG068544NIA NIH HHS K99AG068544NIA NIH HHS R00 AG068544Simons Foundation DMS-1764421
6 · The paper itself

Abstract

It is known that research into human genes is heavily skewed towards genes that have been widely studied for decades, including many genes that were being studied before the productive phase of the Human Genome Project. This means that the genes most frequently investigated by the research community tend to be only marginally more important to human physiology and disease than a random selection of genes. Based on an analysis of 10,395 research publications about SARS-CoV-2 that mention at least one human gene, we report here that the COVID-19 literature up to mid-October 2020 follows a similar pattern. This means that a large number of host genes that have been implicated in SARS-CoV-2 infection by four genome-wide studies remain unstudied. While quantifying the consequences of this neglect is not possible, they could be significant.

Indexed as

COVID-19Gene OntologyGenome, HumanGenome-Wide Association StudyHost Microbial InteractionsHumansPandemicsPublicationsSARS-CoV-2biascomputational biologyCOVID-19humanhuman geneticsinfectious diseasemeta-researchmeta-sciencemicrobiologyscientific literaturesystems biologyvirus

Identifiers

PMID33231169
PMCPMC7685703

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.