Evidence map›Paper›PMID 33230318›Full record

ArticleNature nanotechnology2021

Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy.

Noriyuki Kodera, Daisuke Noshiro, Sujit K Dora, Tetsuya Mori, Johnny Habchi, David Blocquel, Antoine Gruet, Marion Dosnon, Edoardo Salladini, Christophe Bignon and 8 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Nature nanotechnology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
10.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 121 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Noriyuki Kodera *Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa, Japan.
Daisuke Noshiro *Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa, Japan.ORCID http://orcid.org/0000-0001-7024-2054
Sujit K Dora *Department of Physics, Institute of Science and Engineering, Kanazawa University, Kakuma-machi, Kanazawa, Japan.
Tetsuya MoriDepartment of Physics, Institute of Science and Engineering, Kanazawa University, Kakuma-machi, Kanazawa, Japan.
Johnny HabchiAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.
David BlocquelAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.
Antoine GruetAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.
Marion DosnonAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.
Edoardo SalladiniAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.ORCID http://orcid.org/0000-0002-5152-5953
Christophe BignonAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France.
Yuko FujiokaInstitute of Microbial Chemistry, Tokyo, Japan.
Takashi OdaGraduate School of Medical Life Science, Yokohama City University, Yokohama, Japan.
Nobuo N NodaInstitute of Microbial Chemistry, Tokyo, Japan.ORCID http://orcid.org/0000-0002-6940-8069
Mamoru SatoGraduate School of Medical Life Science, Yokohama City University, Yokohama, Japan.
Marina LottiDepartment of Biotechnology and Biosciences, State University of Milano-Bicocca, Milano, Italy.ORCID http://orcid.org/0000-0001-5419-7572
Mineyuki MizuguchiFaculty of Pharmaceutical Sciences, University of Toyama, Toyama, Japan.
Sonia LonghiAix-Marseille University and CNRS, Laboratoire Architecture et Fonction des Macromolecules Biologiques (AFMB), UMR 7257, Marseille, France. sonia.longhi@univ-amu.fr.ORCID http://orcid.org/0000-0002-6829-6771
Toshio AndoNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa, Japan. tando@staff.kanazawa-u.ac.jp.ORCID http://orcid.org/0000-0001-8819-154X
Centre National de la Recherche Scientifique · FRKanazawa University · JPMicrobial Chemistry Research Foundation · JPYokohama City University · JPUniversity of Milano-Bicocca · ITUniversity of Toyama · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intrinsically disordered proteins (IDPs) are ubiquitous proteins that are disordered entirely or partly and play important roles in diverse biological phenomena. Their structure dynamically samples a multitude of conformational states, thus rendering their structural analysis very difficult. Here we explore the potential of high-speed atomic force microscopy (HS-AFM) for characterizing the structure and dynamics of IDPs. Successive HS-AFM images of an IDP molecule can not only identify constantly folded and constantly disordered regions in the molecule, but can also document disorder-to-order transitions. Moreover, the number of amino acids contained in these disordered regions can be roughly estimated, enabling a semiquantitative, realistic description of the dynamic structure of IDPs.

Indexed as

Microscopy, Atomic ForceHumansIntrinsically Disordered ProteinsMolecular ImagingMutationProtein ConformationProtein FoldingQuantitative Structure-Activity RelationshipIntrinsically Disordered Proteins

Identifiers

PMID33230318
OpenAlexW3110378419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.