Evidence map›Paper›PMID 33230303›Full record

ArticleNature cell biology2020

Haematopoietic stem cell-dependent Notch transcription is mediated by p53 through the Histone chaperone Supt16h.

Sophia G Espanola, Hyemin Song, Eunjin Ryu, Aditya Saxena, Eun-Sun Kim, Jennifer E Manegold, Chanond A Nasamran, Debashis Sahoo, Chang-Kyu Oh, Cara Bickers and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 3 institutions in 2 countries.

Sophia G EspanolaDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA.
Hyemin SongDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA.
Eunjin RyuSchool of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea.ORCID http://orcid.org/0000-0003-4511-117X
Aditya SaxenaSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-7908-1565
Eun-Sun KimCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.
Jennifer E ManegoldDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA.
Chanond A NasamranCenter for Computational Biology and Bioinformatics, University of California, San Diego, La Jolla, CA, USA.
Debashis SahooDepartment of Pediatrics and Department of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2329-8228
Chang-Kyu OhCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.
Cara BickersDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA.
Unbeom ShinSchool of Life Sciences, Ulsan National Institute of Science and Technology (UNIST), Ulsan, Republic of Korea.
Stephanie GraingerSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Yong Hwan ParkCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.
Lauren PandolfoSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Mi-Sun KangCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.ORCID http://orcid.org/0000-0003-3629-2589
Sukhyun KangCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.
Kyungjae MyungCenter for Genomic Integrity, Institute for Basic Science (IBS), Ulsan, Republic of Korea.
Kimberly L CooperSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Deborah YelonSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
David TraverDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA. dtraver@ucsd.edu.ORCID http://orcid.org/0000-0002-9652-7653
Yoonsung LeeDepartment of Cellular and Molecular Medicine and Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA. yoonsunglee@ibs.re.kr.ORCID http://orcid.org/0000-0001-9934-2390
University of California San Diego · USInstitute for Basic Science · KRUlsan National Institute of Science and Technology · KR

Funding

VIRAL MALIGNANCYP30CA023100 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DIANE M SIMEONE · 1985 to 2026
$124.9M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Molecular and functional dissection of zebrafish hematopoietic stem cell nicheR01DK074482 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TRAVER, DAVID · 2006 to 2024
$6.5M
Predoctoral and Postdoctoral Training in Cancer Cell BiologyT32CA067754 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEAN Y.J. WANG · 1995 to 2026
$6.5M
Macrophage Polarization in Response to Infections and InflammationR01AI155696 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA, SAHOO, DEBASHIS · 2020 to 2024
$4.9M
Summer Student Research on the Application of Boolean AnalysisR01GM138385 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2020 to 2023
$2.0M
The Role of Wnt Signaling in Normal and Abnormal HematopoiesisR00HL133458 · NHLBI · VAN ANDEL RESEARCH INSTITUTE · PI GRAINGER, STEPHANIE LAURA · 2019 to 2021
$990k
Precision therapeutics of inflammatory bowel disease guided by Boolean logicUG3TR003355 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA, GHOSH, PRADIPTA · 2020 to 2022
$937k
Application of Boolean Networks to discover stem and progenitor cellsR00CA151673 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2014 to 2016
$717k
The Role of Wnt Signaling in Normal and Abnormal HematopoiesisK99HL133458 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GRAINGER, STEPHANIE LAURA · 2017 to 2018
$292k
NCATS NIH HHS UG3 TR003355NCI NIH HHS P30 CA023100NCI NIH HHS R00 CA151673NCI NIH HHS T32 CA067754NHLBI NIH HHS K99 HL133458NHLBI NIH HHS R00 HL133458NIAID NIH HHS R01 AI155696NIDDK NIH HHS R01 DK074482NIGMS NIH HHS R01 GM138385NIGMS NIH HHS T32 GM008666
6 · The paper itself

Abstract

Haematopoietic stem and progenitor cells (HSPCs) have been the focus of developmental and regenerative studies, yet our understanding of the signalling events regulating their specification remains incomplete. We demonstrate that supt16h, a component of the Facilitates chromatin transcription (FACT) complex, is required for HSPC formation. Zebrafish supt16h mutants express reduced levels of Notch-signalling components, genes essential for HSPC development, due to abrogated transcription. Whereas global chromatin accessibility in supt16h mutants is not substantially altered, we observe a specific increase in p53 accessibility, causing an accumulation of p53. We further demonstrate that p53 influences expression of the Polycomb-group protein PHC1, which functions as a transcriptional repressor of Notch genes. Suppression of phc1 or its upstream regulator, p53, rescues the loss of both Notch and HSPC phenotypes in supt16h mutants. Our results highlight a relationship between supt16h, p53 and phc1 to specify HSPCs via modulation of Notch signalling.

Indexed as

AnimalsAnimals, Genetically ModifiedCell Cycle ProteinsGene Expression ProfilingGene Expression Regulation, DevelopmentalGene OntologyHematopoietic Stem CellsMutationPolycomb Repressive Complex 1Receptors, NotchTranscription FactorsTranscription, GeneticTumor Suppressor Protein p53ZebrafishZebrafish ProteinsCell Cycle ProteinsPolycomb Repressive Complex 1Receptors, NotchTranscription FactorsTumor Suppressor Protein p53Zebrafish Proteins

Identifiers

PMID33230303
PMCPMC8092813
OpenAlexW3108507330

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.