Evidence map›Paper›PMID 33230180›Full record

ArticleScientific reports2020

Virtual screening of anti-HIV1 compounds against SARS-CoV-2: machine learning modeling, chemoinformatics and molecular dynamics simulation based analysis.

Mahesha Nand, Priyanka Maiti, Tushar Joshi, Subhash Chandra, Veena Pande, Jagdish Chandra Kuniyal, Muthannan Andavar Ramakrishnan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

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  14. Inhibition by components ofJournal of enzyme inhibition and medicinal chemistry · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Mahesha NandEnvironmental Information System on Himalayan Ecology, G.B. Pant National Institute of Himalayan Environment, Kosi-Katarmal, Almora, Uttarakhand, 263 643, India.
Priyanka MaitiCentre for Environmental Assessment and Climate Change, G.B. Pant National Institute of Himalayan Environment, Kosi-Katarmal, Almora, Uttarakhand, 263 643, India. priyankamaiti.06@gmail.com.ORCID 0000-0002-9687-6538
Tushar JoshiDepartment of Biotechnology, Kumaun University, Bhimtal Campus, Bhimtal, Uttarakhand, 263 136, India.
Subhash ChandraDepartment of Botany, Kumaun University, S.S.J. Campus, Almora, Uttarakhand, 263 601, India. scjnu@yahoo.co.in.
Veena PandeDepartment of Biotechnology, Kumaun University, Bhimtal Campus, Bhimtal, Uttarakhand, 263 136, India.
Jagdish Chandra KuniyalCentre for Environmental Assessment and Climate Change, G.B. Pant National Institute of Himalayan Environment, Kosi-Katarmal, Almora, Uttarakhand, 263 643, India.
Muthannan Andavar RamakrishnanICAR-Indian Veterinary Research Institute, Bengaluru, Karnataka, 560 024, India. maramakrishnan@gmail.com.
G.B. Pant Institute of Himalayan Environment and Development · INKumaun University · INIndian Veterinary Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COVID-19 caused by the SARS-CoV-2 is a current global challenge and urgent discovery of potential drugs to combat this pandemic is a need of the hour. 3-chymotrypsin-like cysteine protease (3CLpro) enzyme is the vital molecular target against the SARS-CoV-2. Therefore, in the present study, 1528 anti-HIV1compounds were screened by sequence alignment between 3CLpro of SARS-CoV-2 and avian infectious bronchitis virus (avian coronavirus) followed by machine learning predictive model, drug-likeness screening and molecular docking, which resulted in 41 screened compounds. These 41 compounds were re-screened by deep learning model constructed considering the IC

Indexed as

COVID-19 Drug TreatmentDeep LearningMolecular Dynamics SimulationAnti-HIV AgentsAntiviral AgentsCheminformaticsCoronavirus 3C ProteasesCOVID-19Drug Evaluation, PreclinicalDrug RepositioningHIV-1HumansInfectious bronchitis virusMolecular Docking SimulationProtease InhibitorsSARS-CoV-2Anti-HIV AgentsAntiviral AgentsCoronavirus 3C ProteasesProtease Inhibitors

Identifiers

PMID33230180
PMCPMC7683650
OpenAlexW3108045603

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.