Evidence map›Paper›PMID 33229581›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Local conformal autoencoder for standardized data coordinates.

Erez Peterfreund, Ofir Lindenbaum, Felix Dietrich, Tom Bertalan, Matan Gavish, Ioannis G Kevrekidis, Ronald R Coifman

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Multi-modal Differentiable Unsupervised Feature Selection.Proceedings of machine learning research · 2023
    Article
  3. On Manifold Learning in Plato's Cave: Remarks on Manifold Learning and Physical Phenomena.... International Conference on Sampling Theory and Applications (SampTA). International Conference on Sampling Theory and Applications · 2023
    Article
  4. LDLE: Low Distortion Local Eigenmaps.Journal of machine learning research : JMLR
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Erez PeterfreundSchool of Computer Science and Engineering, Hebrew University of Jerusalem, Jerusalem 9190401, Israel.
Ofir LindenbaumProgram in Applied Mathematics, Yale University, New Haven, CT 06520.
Felix DietrichDepartment of Informatics, Technical University of Munich, 80333 Munich, Germany.ORCID 0000-0002-2906-1769
Tom BertalanDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD 21218.
Matan GavishSchool of Computer Science and Engineering, Hebrew University of Jerusalem, Jerusalem 9190401, Israel.ORCID 0000-0001-6747-6888
Ioannis G KevrekidisDepartment of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD 21218.
Ronald R CoifmanProgram in Applied Mathematics, Yale University, New Haven, CT 06520; coifman-ronald@yale.edu.
Hebrew University of Jerusalem · ILJohns Hopkins University · USYale University · USTechnical University of Munich · DE

Funding

EFFICIENT METHODS FOR CALIBRATION, CLUSTERING, VISUALIZATION AND IMPUTATION OF LARGE scRNA-seq DATAR01GM131642 · NIGMS · YALE UNIVERSITY · PI KLUGER, YUVAL · 2019 to 2022
$1.6M
CRCNS: Sensory-Motor Integration in Mammalian Brian: experiment, analysis, modelingR01NS100049 · NINDS · YALE UNIVERSITY · PI COIFMAN, RONALD R · 2016 to 2019
$821k
NIGMS NIH HHS R01 GM131642NINDS NIH HHS R01 NS100049
6 · The paper itself

Abstract

We propose a local conformal autoencoder (LOCA) for standardized data coordinates. LOCA is a deep learning-based method for obtaining standardized data coordinates from scientific measurements. Data observations are modeled as samples from an unknown, nonlinear deformation of an underlying Riemannian manifold, which is parametrized by a few normalized, latent variables. We assume a repeated measurement sampling strategy, common in scientific measurements, and present a method for learning an embedding in [Formula: see text] that is isometric to the latent variables of the manifold. The coordinates recovered by our method are invariant to diffeomorphisms of the manifold, making it possible to match between different instrumental observations of the same phenomenon. Our embedding is obtained using LOCA, which is an algorithm that learns to rectify deformations by using a local z-scoring procedure, while preserving relevant geometric information. We demonstrate the isometric embedding properties of LOCA in various model settings and observe that it exhibits promising interpolation and extrapolation capabilities, superior to the current state of the art. Finally, we demonstrate LOCA's efficacy in single-site Wi-Fi localization data and for the reconstruction of three-dimensional curved surfaces from two-dimensional projections.

Indexed as

AlgorithmsData AnalysisReference Standardsautoencodercanonical coordinatesdimensionality reductionmanifold learning

Identifiers

PMID33229581
PMCPMC7733838
OpenAlexW3109222830

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.