Evidence map›Paper›PMID 33229574›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Natural hybrid silica/protein superstructure at atomic resolution.

Stefan Görlich, Abisheik John Samuel, Richard Johannes Best, Ronald Seidel, Jean Vacelet, Filip Karol Leonarski, Takashi Tomizaki, Bernd Rellinghaus, Darius Pohl, Igor Zlotnikov

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Co-option of Lysosomal Machinery for Sponge Biosilicification.bioRxiv : the preprint server for biology · 2026
    Article
  2. Molecular tuning of DNA framework-programmed silicification by cationic silica cluster attachment.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. The genome of the reef-building glass spongeRoyal Society open science · 2023
    Article
  5. Arrested in Glass: Actin within Sophisticated Architectures of Biosilica in Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Stefan GörlichB CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, 01069 Dresden, Germany.ORCID 0000-0003-2221-3181
Abisheik John SamuelB CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, 01069 Dresden, Germany.
Richard Johannes BestB CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, 01069 Dresden, Germany.
Ronald SeidelB CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, 01069 Dresden, Germany.ORCID 0000-0003-4870-6726
Jean VaceletInstitut Méditerranéen de Biodiversité et d'Écologie Marine et Continentale (IMBE), CNRS, Aix-Marseille Université, Université d'Avignon, 13007 Marseille, France.ORCID 0000-0001-6035-2372
Filip Karol LeonarskiSwiss Light Source, Paul Scherrer Institute, 5232 Villigen, Switzerland.
Takashi TomizakiSwiss Light Source, Paul Scherrer Institute, 5232 Villigen, Switzerland.
Bernd RellinghausDresden Center for Nanoanalysis (DCN), Center for Advancing Electronics (cfaed), Technische Universität Dresden, 01069 Dresden, Germany.ORCID 0000-0002-1367-8545
Darius PohlDresden Center for Nanoanalysis (DCN), Center for Advancing Electronics (cfaed), Technische Universität Dresden, 01069 Dresden, Germany.
Igor ZlotnikovB CUBE - Center for Molecular Bioengineering, Technische Universität Dresden, 01069 Dresden, Germany; igor.zlotnikov@tu-dresden.de.ORCID 0000-0003-2388-9028
Technische Universität Dresden · DEPaul Scherrer Institute · CHCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Formation of highly symmetric skeletal elements in demosponges, called spicules, follows a unique biomineralization mechanism in which polycondensation of an inherently disordered amorphous silica is guided by a highly ordered proteinaceous scaffold, the axial filament. The enzymatically active proteins, silicateins, are assembled into a slender hybrid silica/protein crystalline superstructure that directs the morphogenesis of the spicules. Furthermore, silicateins are known to catalyze the formation of a large variety of other technologically relevant organic and inorganic materials. However, despite the biological and biotechnological importance of this macromolecule, its tertiary structure was never determined. Here we report the atomic structure of silicatein and the entire mineral/organic hybrid assembly with a resolution of 2.4 Å. In this work, the serial X-ray crystallography method was successfully adopted to probe the 2-µm-thick filaments in situ, being embedded inside the skeletal elements. In combination with imaging and chemical analysis using high-resolution transmission electron microscopy, we provide detailed information on the enzymatic activity of silicatein, its crystallization, and the emergence of a functional three-dimensional silica/protein superstructure in vivo. Ultimately, we describe a naturally occurring mineral/protein crystalline assembly at atomic resolution.

Indexed as

biomineralizationprotein crystallographysilicasponges

Identifiers

PMID33229574
PMCPMC7733841
OpenAlexW3106545631

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.