Evidence map›Paper›PMID 33229571›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

High-resolution mouse subventricular zone stem-cell niche transcriptome reveals features of lineage, anatomy, and aging.

Xuanhua P Xie, Dan R Laks, Daochun Sun, Asaf Poran, Ashley M Laughney, Zilai Wang, Jessica Sam, German Belenguer, Isabel Fariñas, Olivier Elemento and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
  2. GFAPProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Insights gained from single-cell sequencing analysis of ischemic stroke.Frontiers in cell and developmental biology · 2026
    Review
  4. Article
  5. Article
  6. Hallmarks of stem cell aging.Cell stem cell · 2025
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. iScience · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xuanhua P XieCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.ORCID 0000-0001-8032-4715
Dan R LaksCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.ORCID 0000-0002-9691-8339
Daochun SunCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Asaf PoranInstitute for Computational Biomedicine, Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.ORCID 0000-0001-9118-1051
Ashley M LaughneyInstitute for Computational Biomedicine, Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.
Zilai WangCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065.
Jessica SamBiochemistry, Cell & Molecular Biology Graduate Program, Weill Cornell Medicine, New York, NY 10065.
German BelenguerCentro de Investigación Biomédica en Red sobre Enfermedades Neurodegenerativas, 28031 Madrid, Spain.
Isabel FariñasDepartamento de Biología Celular, Biología Funcional y Antropología Física, Universidad de Valencia, 46010 Valencia, Spain.
Olivier ElementoInstitute for Computational Biomedicine, Department of Physiology and Biophysics, Weill Cornell Medicine, New York, NY 10065.
Xiuping ZhouInstitute of Nervous System Diseases, Xuzhou Medical University, 221002 Jiangsu, People's Republic of China.
Luis F ParadaCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, NY 10065; paradal@mskcc.org.ORCID 0000-0003-2295-1432

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Isolation, characterization and translational development of glioma stem cellsR35CA210100 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI PARADA, LUIS FERNANDO · 2017 to 2023
$7.4M
Genetic Mouse Models of GliomaR01CA131313 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI PARADA, LUIS FERNANDO · 2009 to 2016
$3.2M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA131313NCI NIH HHS R35 CA210100
6 · The paper itself

Abstract

Adult neural stem cells (NSC) serve as a reservoir for brain plasticity and origin for certain gliomas. Lineage tracing and genomic approaches have portrayed complex underlying heterogeneity within the major anatomical location for NSC, the subventricular zone (SVZ). To gain a comprehensive profile of NSC heterogeneity, we utilized a well-validated stem/progenitor-specific reporter transgene in concert with single-cell RNA sequencing to achieve unbiased analysis of SVZ cells from infancy to advanced age. The magnitude and high specificity of the resulting transcriptional datasets allow precise identification of the varied cell types embedded in the SVZ including specialized parenchymal cells (neurons, glia, microglia) and noncentral nervous system cells (endothelial, immune). Initial mining of the data delineates four quiescent NSC and three progenitor-cell subpopulations formed in a linear progression. Further evidence indicates that distinct stem and progenitor populations reside in different regions of the SVZ. As stem/progenitor populations progress from neonatal to advanced age, they acquire a deficiency in transition from quiescence to proliferation. Further data mining identifies stage-specific biological processes, transcription factor networks, and cell-surface markers for investigation of cellular identities, lineage relationships, and key regulatory pathways in adult NSC maintenance and neurogenesis.

Indexed as

Cell LineageAdult Stem CellsAgingAnimalsBiomarkersGreen Fluorescent ProteinsHumansLateral VentriclesMiceNeural Stem CellsStem Cell NicheTranscriptomeTransgenesBiomarkersGreen Fluorescent Proteinsagingneural stem cellsingle-cell RNA sequencingsubventricular zonetranscriptome

Identifiers

PMID33229571
PMCPMC7733854

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.