ArticleBMC plant biology2020
Global analysis of the AP2/ERF gene family in rose (Rosa chinensis) genome unveils the role of RcERF099 in Botrytis resistance.
Article in BMC plant biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 41 citations in OpenAlex.
- Genome-wide AP2/ERF analysis identifies HmaERF87 as a positive regulator of Hydrangea macrophylla leaf spot resistance.Plant cell reports · 2026Article
- Comparative transcriptomics among peach, almond and their interspecific F1 hybrid reveal key common and species-specific regulatory pathways involved in fruit development.BMC plant biology · 2026Article
- Engineering resilient roses: molecular insights into biotic and abiotic stress adaptation.Horticulture research · 2026Article
- Article
- Integrating ATAC-Seq and Pan-Genomics Identifies Stress-MemoryFood science & nutrition · 2025Article
- The Role of AP2/ERF Transcription Factors in Plant Responses to Biotic Stress.International journal of molecular sciences · 2025Review
- Functional analysis of AP2/ERF family members in flavonoid biosynthesis of wolfberry.Frontiers in plant science · 2025Article
- Genome-Wide Analyses ofInternational journal of molecular sciences · 2024Article
- Comprehensive transcriptome analysis of AP2/ERFs inFrontiers in plant science · 2024Article
- Article
- Low-Oxygen Responses of Cut Carnation Flowers Associated with Modified Atmosphere Packaging.Plants (Basel, Switzerland) · 2023Article
- Genome-Wide Identification and Expression Analysis of the TIR-NBS-LRR Gene Family and Its Response to Fungal Disease in Rose (Biology · 2023Article
- Integrative HPLC profiling and transcriptome analysis revealed insights into anthocyanin accumulation and key genes at three developmental stages of black rice (Frontiers in plant science · 2023Article
- Genome-Wide Identification of ERF Transcription Factor Family and Functional Analysis of the Drought Stress-Responsive Genes inInternational journal of molecular sciences · 2022Article
- Genome-wide analysis of BURP genes and identification of a BURP-V gene RcBURP4 in Rosa chinensis.Plant cell reports · 2022Article
- Deciphering the Molecular Signatures Associated With Resistance toFrontiers in plant science · 2022Article
- Comparative RNA-seq analysis reveals a critical role for ethylene in rose (Frontiers in plant science · 2022Article
- Molecular mechanisms underlying multi-level defense responses of horticultural crops to fungal pathogens.Horticulture research · 2022Article
- Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants.International journal of molecular sciences · 2021Review
- Transcriptomic Analysis of the Anthocyanin Biosynthetic Pathway Reveals the Molecular Mechanism Associated with Purple Color Formation in Dendrobium Nestor.Life (Basel, Switzerland) · 2021Article
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Authors and funding
7 authors at 4 institutions in 1 country.
Funding
Abstract
backgroundThe AP2/ERFs belong to a large family of transcription factors in plants. The AP2/ERF gene family has been identified as a key player involved in both biotic and abiotic stress responses in plants, however, no comprehensive study has yet been carried out on the AP2/ERF gene family in rose (Rosa sp.), the most important ornamental crop worldwide.
resultsThe present study comprises a genome-wide analysis of the AP2/ERF family genes (RcERFs) in the rose, involving their identification, gene structure, phylogenetic relationship, chromosome localization, collinearity analysis, as well as their expression patterns. Throughout the phylogenetic analysis, a total of 131 AP2/ERF genes in the rose genome were divided into 5 subgroups. The RcERFs are distributed over all the seven chromosomes of the rose, and genome duplication may have played a key role in their duplication. Furthermore, Ka/Ks analysis indicated that the duplicated RcERF genes often undergo purification selection with limited functional differentiation. Gene expression analysis revealed that 23 RcERFs were induced by infection of the necrotrophic fungal pathogen Botrytis cinerea. Presumably, these RcERFs are candidate genes which can react to the rose's resistance against Botrytis cinerea infection. By using virus-induced gene silencing, we confirmed that RcERF099 is an important regulator involved in the B.cinerea resistance in the rose petal.
conclusionOverall, our results conclude the necessity for further study of the AP2/ERF gene family in rose, and promote their potential application in improving the rose when subjected to biological stress.
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