ArticleVirus research2021
Genomic surveillance of SARS-CoV-2 in Thailand reveals mixed imported populations, a local lineage expansion and a virus with truncated ORF7a.
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Article in Virus research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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18citing papers in PubMed
0.8field-weighted citation impact, top 16% of its field
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Who cites it
18 citing papers in PubMed, 33 citations in OpenAlex.
- Mapping the frontiers of genomic disease surveillance research in the ASEAN region: scientometric insights for precision public health and next-generation epidemic intelligence.Briefings in bioinformatics · 2026Article
- Cross- Wellcome Africa Asian Programmes (AAPs) Acceleration of Genomics for Escalating infectious Diseases, (CAGED) Consortium.Wellcome open research · 2026Article
- Evaluation of SARS-CoV-2 ORF7a Deletions from COVID-19-Positive Individuals and Its Impact on Virus Spread in Cell Culture.Viruses · 2023Article
- Persistence of a Frameshifting Deletion in SARS-CoV-2 ORF7a for the Duration of a Major Outbreak.Viruses · 2023Article
- Emergence and spreading of the largest SARS-CoV-2 deletion in the Delta AY.20 lineage from Uruguay.Gene reports · 2022Article
- Impairment of antiviral immune response and disruption of cellular functions by SARS-CoV-2 ORF7a and ORF7b.iScience · 2022Article
- Mutational induction in SARS-CoV-2 major lineages by experimental exposure to neutralising sera.Scientific reports · 2022Article
- Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand.Nature communications · 2022Article
- Review
- A 336-nucleotide in-frame deletion in ORF7a gene of SARS-CoV-2 identified in genomic surveillance by next-generation sequencing.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2022Article
- Consecutive deletions in a unique Uruguayan SARS-CoV-2 lineage evidence the genetic variability potential of accessory genes.PloS one · 2022Article
- Characterization of SARS-CoV-2 ORF6 deletion variants detected in a nosocomial cluster during routine genomic surveillance, Lyon, France.Emerging microbes & infections · 2021Article
- Southeast Asia is an emerging hotspot for COVID-19.Nature medicine · 2021Article
- Expansion of a SARS-CoV-2 Delta variant with an 872 nt deletion encompassingEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2021Article
- SARS-CoV-2 one year on: evidence for ongoing viral adaptation.The Journal of general virology · 2021Review
- Pitfalls of exceptions for COVID-19 travel quarantine: lessons from a dignitary visit to Thailand.Journal of travel medicine · 2021Article
- The Pandemic Experience in Southeast Asia: Interface Between SARS-CoV-2, Malaria, and Dengue.Frontiers in tropical diseases · 2021Article
- Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation.Virus evolution · 2020Article
Corrections and comments
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Authors and funding
21 authors at 7 institutions in 2 countries.
Khajohn JoonlasakCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Elizabeth M BattyCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand; Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Theerarat KochakarnCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Genomics and Evolutionary Medicine Unit (GEM), Center of Excellence in Malaria Research, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand; Faculty of Medicine Ramathibodi Hospital, Mahidol University Bangkok, Thailand.
Bhakbhoom PanthanCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Center for Medical Genomics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Krittikorn KümpornsinCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Wellcome Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.
Poramate JiaranaiCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Center for Medical Genomics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Arporn WangwiwatsinCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Biology, Faculty of Science, Khon Kaen University, Khon Kaen, Thailand.
Angkana HuangCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Namfon KotananCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Genomics and Evolutionary Medicine Unit (GEM), Center of Excellence in Malaria Research, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.
Peera Jaru-AmpornpanVirology and Cell Technology Research Team, National Center for Genetic Engineering and Biotechnology (BIOTEC), National Science and Technology Development Agency (NSTDA), Pathum Thani, Thailand.
Wudtichai ManasatienkijCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Treewat WatthanachockchaiDivision of Virology, Department of Pathology, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Kingkan RakmaneeDivision of Virology, Department of Pathology, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Anthony R JonesCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Stefan FernandezCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Insee SensornCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Center for Medical Genomics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Somnuek SungkanuparphChakri Naruebodindra Medical Institute, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Samut Prakan, Thailand.
Ekawat PasomsubCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Division of Virology, Department of Pathology, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Chonticha KlungthongCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Department of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Thanat ChookajornCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Genomics and Evolutionary Medicine Unit (GEM), Center of Excellence in Malaria Research, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand. Electronic address: thanat.cho@mahidol.edu.
Wasun ChantratitaCOVID-19 Network Investigations Alliance (CONI), Bangkok, Thailand; Center for Medical Genomics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand. Electronic address: wasun.cha@mahidol.ac.th.
Armed Forces Research Institute of Medical Science · THMahidol University · THRamathibodi Hospital · THKhon Kaen University · THMahidol Oxford Tropical Medicine Research Unit · THNational Center for Genetic Engineering and Biotechnology · THWellcome Sanger Institute · GB
Funding
Wellcome Trust
Abstract
Coronavirus Disease 2019 (COVID-19) is a global public health threat. Genomic surveillance of SARS-CoV-2 was implemented in March of 2020 at a major diagnostic hub in Bangkok, Thailand. Several virus lineages supposedly originated in many countries were found, and a Thai-specific lineage, designated A/Thai-1, has expanded to be predominant in Thailand. A virus sample in the SARS-CoV-2 A/Thai-1 lineage contains a frame-shift deletion at ORF7a, encoding a putative host antagonizing factor of the virus.
Indexed as
Genome, ViralCOVID-19Epidemiological MonitoringFrameshift MutationGenomicsHumansPhylogenyPublic HealthSARS-CoV-2ThailandViral ProteinsORF7a protein, SARS-CoV-2Viral ProteinsCOVID-19Genomic surveillanceSARS-CoV-2Thailand
Identifiers
What OpenQuestion holds
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.