Evidence map›Paper›PMID 33226342›Full record

ArticleeLife2020

Combined transient ablation and single-cell RNA-sequencing reveals the development of medullary thymic epithelial cells.

Kristen L Wells, Corey N Miller, Andreas R Gschwind, Wu Wei, Jonah D Phipps, Mark S Anderson, Lars M Steinmetz

Open access · goldAbstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 94 citations in OpenAlex.

  1. Review
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  6. Runx3 instructs AireJournal of autoimmunity · 2026
    Article
  7. Review
  8. Article
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  13. Review
  14. Sterile production of interferons in the thymus.Journal of immunology (Baltimore, Md. : 1950) · 2025
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. The Ins and Outs of Thymic Epithelial Cell Differentiation and Function.Advances in experimental medicine and biology · 2025
    Review
  20. Thymic Mimetic Cells: Ontogeny as Immunology.Annual review of cell and developmental biology · 2024
    Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kristen L Wells *Department of Genetics, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-7466-8164
Corey N Miller *Diabetes Center, University of California, San Francisco, San Francisco, United States.ORCID 0000-0002-1291-0074
Andreas R GschwindDepartment of Genetics, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-0769-6907
Wu WeiStanford Genome Technology Center, Stanford University, Palo Alto, United States.
Jonah D PhippsDiabetes Center, University of California, San Francisco, San Francisco, United States.
Mark S AndersonDiabetes Center, University of California, San Francisco, San Francisco, United States.ORCID 0000-0002-3093-4758
Lars M SteinmetzDepartment of Genetics, Stanford University School of Medicine, Stanford, United States.ORCID 0000-0002-3962-2865
Stanford University · USUniversity of California, San Francisco · USEuropean Molecular Biology Laboratory · DE

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
GENETICS TRAINING PROGRAM FOR PHD CANDIDATEST32GM007790 · NIGMS · STANFORD UNIVERSITY · PI BRUNET, ANNE, KINGSLEY, DAVID M · 1985 to 2020
$12.8M
MOLECULAR AND CELLULAR IMMUNOLOGYT32AI007334 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CYSTER, JASON G · 1988 to 2023
$11.0M
Thymic medullary epithelial cell turnover and control of immune toleranceR37AI097457 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Mark S Anderson · 2017 to 2026
$4.0M
Thymic medullary epithelial cell turnover and control of immune toleranceR01AI097457 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANDERSON, MARK S · 2012 to 2016
$1.9M
High-throughput sequencer for multi-scale genomic studiesS10OD020141 · OD · STANFORD UNIVERSITY · PI SNYDER, MICHAEL P. · 2015 to 2015
$600k
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
National Science Foundation DGE- 1656518NHGRI NIH HHS P01 HG000205NIAID NIH HHS R01 AI097457NIAID NIH HHS R37 AI097457NIAID NIH HHS T32 AI007334NIGMS NIH HHS T32 GM007790NIH HHS S10 OD020141NIH HHS S10 OD021822
6 · The paper itself

Abstract

Medullary thymic epithelial cells (mTECs) play a critical role in central immune tolerance by mediating negative selection of autoreactive T cells through the collective expression of the peripheral self-antigen compartment, including tissue-specific antigens (TSAs). Recent work has shown that gene-expression patterns within the mTEC compartment are heterogenous and include multiple differentiated cell states. To further define mTEC development and medullary epithelial lineage relationships, we combined lineage tracing and recovery from transient in vivo mTEC ablation with single-cell RNA-sequencing in

Indexed as

AnimalsCell DifferentiationCell LineageEpithelial CellsMiceMice, Inbred C57BLMice, Mutant StrainsSequence Analysis, RNASingle-Cell AnalysisThymus Glandgeneticsgenomicsimmune systemimmunologyinflammationmedullary thymic epithelial cellmousesingle-cell transcriptomics

Identifiers

PMID33226342
PMCPMC7771965
OpenAlexW3110412864

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.