Evidence map›Paper›PMID 33225481›Full record

ArticleTraffic (Copenhagen, Denmark)2021

A highly conserved glutamic acid in ALFY inhibits membrane binding to aid in aggregate clearance.

Erin F Reinhart, Nicole A Litt, Sarah Katzenell, Maria Pellegrini, Ai Yamamoto, Michael J Ragusa

Open access · bronzeAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Macrophage WDFY3, a protector against autoimmunity.bioRxiv : the preprint server for biology · 2024
    Article
  5. The evolving biology of cross-presentation.Seminars in immunology · 2023
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Erin F ReinhartDepartment of Chemistry, Dartmouth College, Hanover, New Hampshire.
Nicole A LittDepartment of Neurology, Pathology and Cell Biology, Columbia University, New York, New York.
Sarah KatzenellDepartment of Chemistry, Dartmouth College, Hanover, New Hampshire.
Maria PellegriniDepartment of Chemistry, Dartmouth College, Hanover, New Hampshire.
Ai YamamotoDepartment of Neurology, Pathology and Cell Biology, Columbia University, New York, New York.
Michael J RagusaDepartment of Chemistry, Dartmouth College, Hanover, New Hampshire.ORCID 0000-0002-0231-0876
Dartmouth College · USColumbia University Irving Medical Center · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Steven D Leach · 1985 to 2026
$91.3M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
Modulating selective autophagy to modify Huntington's diseaseR01NS077111 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Ai Yamamoto · 2012 to 2026
$4.3M
Autophagy and NeurodegenerationR01NS063973 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MELIA, THOMAS JAMES, YAMAMOTO, AI · 2008 to 2019
$3.8M
Dissecting the Molecular Mechanisms of Selective AutophagyR35GM128663 · NIGMS · DARTMOUTH COLLEGE · PI Michael Joseph Ragusa · 2018 to 2026
$3.5M
Selective autophagy in Parkinson'sdiseaseR01NS101663 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Ai Yamamoto · 2018 to 2026
$3.1M
Targeting the IKK-Binding Domain of NEMO for Inhibitors DiscoveryR01GM133844 · NIGMS · DARTMOUTH COLLEGE · PI PELLEGRINI, MARIA MARGHERITA · 2019 to 2022
$1.5M
NCI NIH HHS P30 CA023108NIGMS NIH HHS P20 GM113132NIGMS NIH HHS P20GM113132NIGMS NIH HHS R01 GM133844NIGMS NIH HHS R35 GM128663NIGMS NIH HHS R35GM128663NINDS NIH HHS R01 NS063973NINDS NIH HHS R01NS063973NINDS NIH HHS R01 NS077111NINDS NIH HHS R01NS077111NINDS NIH HHS R01 NS101663NINDS NIH HHS R01NS101663
6 · The paper itself

Abstract

Autophagy-linked FYVE protein (ALFY) is a large, multidomain protein involved in the degradation of protein aggregates by selective autophagy. The C-terminal FYVE domain of ALFY has been shown to bind phosphatidylinositol 3-phosphate (PI(3)P); however, ALFY only partially colocalizes with other FYVE domains in cells. Thus, we asked if the FYVE domain of ALFY has distinct membrane binding properties compared to other FYVE domains and whether these properties might affect its function in vivo. We found that the FYVE domain of ALFY binds weakly to PI(3)P containing membranes in vitro. This weak binding is the result of a highly conserved glutamic acid within the membrane insertion loop in the FYVE domain of ALFY that is not present in any other human FYVE domain. In addition, not only does this glutamic acid reduce binding to membranes in vitro and inhibits its targeting to membranes in vivo, but it is also important for the ability of ALFY to clear protein aggregates.

Indexed as

Adaptor Proteins, Signal TransducingGlutamic AcidAutophagy-Related ProteinsHumansPhosphatidylinositol PhosphatesAdaptor Proteins, Signal TransducingAutophagy-Related ProteinsGlutamic Acidphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesWDFY3 protein, humanALFYautophagyFYVE domainnuclear magnetic resonance spectroscopyphosphatidylinositol 3-phosphateprotein structure

Identifiers

PMID33225481
PMCPMC7902475
OpenAlexW3106696940

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.