Evidence map›Paper›PMID 33223604›Full record

ArticleProceedings of the conference. Association for Computational Linguistics. Meeting2020

BENTO: A Visual Platform for Building Clinical NLP Pipelines Based on CodaLab.

Yonghao Jin, Fei Li, Hong Yu

Abstract read
In one paragraph

Article in Proceedings of the conference. Association for Computational Linguistics. Meeting, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yonghao JinDepartment of Computer Science, University of Massachusetts Lowell, MA, USA.
Fei LiDepartment of Computer Science, University of Massachusetts Lowell, MA, USA.
Hong YuDepartment of Computer Science, University of Massachusetts Lowell, MA, USA.

Funding

EHR Anticoagulants PharmacovigilanceR01HL125089 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI YU, HONG · 2015 to 2019
$4.9M
Detecting bleeding events using EHRs for prediction in AfibR01HL137794 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MCMANUS, DAVID D., YU, HONG · 2018 to 2021
$3.3M
Community Surveillance of Coronary Heart DiseaseR01HL135219 · NHLBI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GOLDBERG, ROBERT JOEL, YU, HONG · 2017 to 2020
$3.2M
Improving Suicide Prediction using NLP-Extracted Social Determinants of HealthR01MH125027 · NIMH · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2020 to 2023
$3.1M
Identifying Opioid Overdose Predictors using EHRsR01DA045816 · NIDA · UNIVERSITY OF MASSACHUSETTS LOWELL · PI BECKER, WILLIAM C, LI, WENJUN · 2018 to 2022
$3.0M
Resource Curation and Evaluation for EHR Note ComprehensionR01LM012817 · NLM · UNIVERSITY OF MASSACHUSETTS LOWELL · PI YU, HONG · 2018 to 2020
$1.0M
NHLBI NIH HHS R01 HL125089NHLBI NIH HHS R01 HL135219NHLBI NIH HHS R01 HL137794NIDA NIH HHS R01 DA045816NIMH NIH HHS R01 MH125027NLM NIH HHS R01 LM012817
6 · The paper itself

Abstract

CodaLab is an open-source web-based platform for collaborative computational research. Although CodaLab has gained popularity in the research community, its interface has limited support for creating reusable tools that can be easily applied to new datasets and composed into pipelines. In clinical domain, natural language processing (NLP) on medical notes generally involves multiple steps, like tokenization, named entity recognition, etc. Since these steps require different tools which are usually scattered in different publications, it is not easy for researchers to use them to process their own datasets. In this paper, we present

Identifiers

PMID33223604
PMCPMC7679080

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.