Evidence map›Paper›PMID 33223527›Full record

ArticleGenes and immunity2020

Genomic profiling of T-cell activation suggests increased sensitivity of memory T cells to CD28 costimulation.

Dafni A Glinos, Blagoje Soskic, Cayman Williams, Alan Kennedy, Luke Jostins, David M Sansom, Gosia Trynka

Open access · hybridAbstract read
In one paragraph

Article in Genes and immunity, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Trial
  2. Integrated multi-omics and machine learning prioritize key immune genes for multiple sclerosis risk prediction.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  3. Article
  4. Cellular Immunity in Chronic Kidney Disease and Changes After Kidney Transplantation.Transplant international : official journal of the European Society for Organ Transplantation · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. A guide to adaptive immune memory.Nature reviews. Immunology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Dafni A GlinosWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
Blagoje SoskicWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.ORCID 0000-0003-3173-4528
Cayman WilliamsUCL Institute of Immunity and Transplantation, Royal Free Hospital, London, NW3 2PF, UK.
Alan KennedyUCL Institute of Immunity and Transplantation, Royal Free Hospital, London, NW3 2PF, UK.
Luke JostinsKennedy Institute of Rheumatology, University of Oxford, Roosevelt Drive, Oxford, OX3 7FY, UK.
David M SansomUCL Institute of Immunity and Transplantation, Royal Free Hospital, London, NW3 2PF, UK. d.sansom@ucl.ac.uk.ORCID 0000-0001-6506-3115
Gosia TrynkaWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK. gosia@sanger.ac.uk.ORCID 0000-0002-6955-9529
The Royal Free Hospital · GBWellcome Sanger Institute · GBCanterbury Christ Church University · GB

Funding

Arthritis Research UK 21147Versus Arthritis 21147Wellcome Trust 204798Wellcome Trust 204798/Z/16/ZWellcome Trust 206194Wellcome Trust 208750Wellcome Trust 208750/Z/17/ZWellcome Trust WT204798Wellcome Trust WT206194
6 · The paper itself

Abstract

T-cell activation is a critical driver of immune responses. The CD28 costimulation is an essential regulator of CD4 T-cell responses, however, its relative importance in naive and memory T cells is not fully understood. Using different model systems, we observe that human memory T cells are more sensitive to CD28 costimulation than naive T cells. To deconvolute how the T-cell receptor (TCR) and CD28 orchestrate activation of human T cells, we stimulate cells using varying intensities of TCR and CD28 and profiled gene expression. We show that genes involved in cell cycle progression and division are CD28-driven in memory cells, but under TCR control in naive cells. We further demonstrate that T-helper differentiation and cytokine expression are controlled by CD28. Using chromatin accessibility profiling, we observe that AP1 transcriptional regulation is enriched when both TCR and CD28 are engaged, whereas open chromatin near CD28-sensitive genes is enriched for NF-kB motifs. Lastly, we show that CD28-sensitive genes are enriched in GWAS regions associated with immune diseases, implicating a role for CD28 in disease development. Our study provides important insights into the differential role of costimulation in naive and memory T-cell responses and disease susceptibility.

Indexed as

TranscriptomeAdultAnimalsCD28 AntigensCD4-Positive T-LymphocytesCell LineCell Line, TumorCells, CulturedCHO CellsCricetinaeCricetulusCytokinesFemaleHumansImmunologic MemoryLymphocyte ActivationCD28 AntigensCytokinesReceptors, Antigen, T-Cell

Identifiers

PMID33223527
PMCPMC7785515
OpenAlexW3107596538

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.