Evidence map›Paper›PMID 33222436›Full record

ArticleACS chemical biology2020

A Bump-Hole Strategy for Increased Stringency of Cell-Specific Metabolic Labeling of RNA.

Kim Nguyen, Miles Kubota, Jon Del Arco, Chao Feng, Monika Singha, Samantha Beasley, Jasmine Sakr, Sunil P Gandhi, Matthew Blurton-Jones, Jesus Fernández Lucas and 1 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Cycloaddition enabled mutational profiling of 5-vinyluridine in RNA.Chemical communications (Cambridge, England) · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kim NguyenDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Miles KubotaDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Jon Del ArcoUniversidad Europea de Madrid, E-28670 Villaviciosa de Odon, Madrid Spain.
Chao FengDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Monika SinghaDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Samantha BeasleyDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Jasmine SakrDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.
Sunil P GandhiNeurobiology and Behavior, University of California, Irvine, Irvine, California 92697, United States.
Matthew Blurton-JonesNeurobiology and Behavior, University of California, Irvine, Irvine, California 92697, United States.
Jesus Fernández LucasUniversidad Europea de Madrid, E-28670 Villaviciosa de Odon, Madrid Spain.ORCID 0000-0001-7045-8306
Robert C SpitaleDepartment of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697, United States.ORCID 0000-0002-3511-8098

Funding

UC Irvine Alzheimer's Disease Research Center Induced Pluripotent Stem Cell CoreP50AG016573 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI LAFERLA, FRANK M · 2000 to 2019
$37.0M
The Alzheimer's Disease Research Center at the University of California, IrvineP30AG066519 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI Mathew Mark Blurton-Jones · 2020 to 2026
$27.9M
CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
Cracking the RNA Localization CodeDP2GM119164 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SPITALE, ROBERT C · 2015 to 2015
$2.2M
A novel platform for the investigation of human microgliaRF1DA048813 · NIDA · UNIVERSITY OF CALIFORNIA-IRVINE · PI BLURTON-JONES, MATHEW MARK, GANDHI, SUNIL · 2019 to 2021
$2.1M
Manipulating DNA repair enzymes to examine the interactions between aging and Alzheimers disease with iPSC-derived microgliaR01AG056303 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI BLURTON-JONES, MATHEW MARK · 2017 to 2021
$1.9M
Multicellular simultaneous chemotranscriptomic profiling of nascent transcription during learningR21MH113062 · NIMH · UNIVERSITY OF CALIFORNIA-IRVINE · PI SPITALE, ROBERT C · 2017 to 2018
$425k
NCI NIH HHS T32 CA009054NIA NIH HHS P30 AG066519NIA NIH HHS P50 AG016573NIA NIH HHS R01 AG056303NIDA NIH HHS RF1 DA048813NIGMS NIH HHS DP2 GM119164NIMH NIH HHS R21 MH113062
6 · The paper itself

Abstract

Profiling RNA expression in a cell-specific manner continues to be a grand challenge in biochemical research. Bioorthogonal nucleosides can be utilized to track RNA expression; however, these methods currently have limitations due to background and incorporation of analogs into undesired cells. Herein, we design and demonstrate that uracil phosphoribosyltransferase can be engineered to match 5-vinyluracil for cell-specific metabolic labeling of RNA with exceptional specificity and stringency.

Indexed as

MutationPentosyltransferasesRNASubstrate SpecificityUracil5-vinyluracilPentosyltransferasesRNAUraciluracil phosphoribosyltransferase

Identifiers

PMID33222436
PMCPMC7814973

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.