ArticleEmerging infectious diseases2020
Genomic Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2, Colombia.
Article in Emerging infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
27 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Detection of respiratory viruses directly from clinical samples using next-generation sequencing: A literature review of recent advances and potential for routine clinical use.Reviews in medical virology · 2022Pooled it
- Routes of importation and spatial dynamics of SARS-CoV-2 variants during localized interventions in Chile.PNAS nexus · 2024Article
- Genomic epidemiology of SARS-CoV-2 δ sublineages of the second wave of 2021 in Antioquia, ColombiaBiomedica : revista del Instituto Nacional de Salud · 2024Article
- Improving COVID-19 vaccine uptake: a message co-design process for a national mHealth intervention in Colombia.Global health action · 2023Article
- Monitoring COVID-19 in Colombia during the first year of the pandemic.Journal of public health research · 2022Article
- Factors Associated with the Level of Physical Activity in Middle-Aged Colombian People during Lockdown in Response to COVID-19: A Cross-Sectional Study.Healthcare (Basel, Switzerland) · 2022Article
- Seroprevalence of anti-SARS-CoV-2 antibodies in Colombia, 2020: A population-based study.Lancet regional health. Americas · 2022Article
- Infection fatality rate and infection attack rate of COVID-19 in South American countries.Infectious diseases of poverty · 2022Article
- Using genomic epidemiology of SARS-CoV-2 to support contact tracing and public health surveillance in rural Humboldt County, California.BMC public health · 2022Article
- Reduced levels of convalescent neutralizing antibodies against SARS-CoV-2 B.1+L249S+E484K lineage.Virus research · 2022Article
- Evolutionary Traits and Genomic Surveillance of SARS-CoV-2 in South America.Global health, epidemiology and genomics · 2022Review
- The unfurl of the coronavirus and its thwack on humans and the environment: a review.Current opinion in environmental science & health · 2021Review
- Genetic diversity of SARS-CoV-2 in South America: demographic history and structuration signals.Archives of virology · 2021Article
- Characterization of the emerging B.1.621 variant of interest of SARS-CoV-2.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021Article
- Phylogenomics reveals multiple introductions and early spread of SARS-CoV-2 into Peru.Journal of medical virology · 2021Article
- In the grip of SARS-CoV-2: The scientific leadership of the Colombian Instituto Nacional de SaludBiomedica : revista del Instituto Nacional de Salud · 2021Article
- Contrasting SARS-CoV-2 RNA copies and clinical symptoms in a large cohort of Colombian patients during the first wave of the COVID-19 pandemic.Annals of clinical microbiology and antimicrobials · 2021Article
- Deciphering the introduction and transmission of SARS-CoV-2 in the Colombian Amazon Basin.PLoS neglected tropical diseases · 2021Article
- Molecular Epidemiology Surveillance of SARS-CoV-2: Mutations and Genetic Diversity One Year after Emerging.Pathogens (Basel, Switzerland) · 2021Article
- Early Transmission Dynamics, Spread, and Genomic Characterization of SARS-CoV-2 in Panama.Emerging infectious diseases · 2021Article
Corrections and comments
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Authors and funding
17 authors.
Funding
Abstract
Coronavirus disease (COVID-19) in Colombia was first diagnosed in a traveler arriving from Italy on February 26, 2020. However, limited data are available on the origins and number of introductions of COVID-19 into the country. We sequenced the causative agent of COVID-19, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), from 43 clinical samples we collected, along with another 79 genome sequences available from Colombia. We investigated the emergence and importation routes for SARS-CoV-2 into Colombia by using epidemiologic, historical air travel, and phylogenetic observations. Our study provides evidence of multiple introductions, mostly from Europe, and documents >12 lineages. Phylogenetic findings validate the lineage diversity, support multiple importation events, and demonstrate the evolutionary relationship of epidemiologically linked transmission chains. Our results reconstruct the early evolutionary history of SARS-CoV-2 in Colombia and highlight the advantages of genome sequencing to complement COVID-19 outbreak investigations.
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