Evidence map›Paper›PMID 33219379›Full record

ArticleMolecular biology and evolution2020

Variable Spontaneous Mutation and Loss of Heterozygosity among Heterozygous Genomes in Yeast.

Duong T Nguyen, Baojun Wu, Hongan Long, Nan Zhang, Caitlyn Patterson, Stephen Simpson, Krystalynne Morris, W Kelley Thomas, Michael Lynch, Weilong Hao

Open access · bronzeAbstract read
In one paragraph

Article in Molecular biology and evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Rise and Fall ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Inflammation and tumor microenvironment.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2023
    Review
  8. Loss of Heterozygosity and Its Importance in Evolution.Journal of molecular evolution · 2023
    Review
  9. Article
  10. Article
  11. Recent insights into the evolution of mutation rates in yeast.Current opinion in genetics & development · 2022
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The insect-killing bacteriumMarine life science & technology · 2021
    Article
  19. Genome-wide mapping of spontaneous genetic alterations in diploid yeast cells.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Duong T NguyenDepartment of Biological Sciences, Wayne State University, Detroit, MI.
Baojun WuDepartment of Biological Sciences, Wayne State University, Detroit, MI.
Hongan LongInstitute of Evolution and Marine Biodiversity, KLMME, Ocean University of China, Qingdao, Shandong Province, China.
Nan ZhangDepartment of Biological Sciences, Wayne State University, Detroit, MI.
Caitlyn PattersonDepartment of Biology, Indiana University, Bloomington, IN.
Stephen SimpsonUniversity of New Hampshire, Durham, NH.
Krystalynne MorrisUniversity of New Hampshire, Durham, NH.
W Kelley ThomasUniversity of New Hampshire, Durham, NH.
Michael LynchCenter for Mechanisms of Evolution, The Biodesign Institute, Arizona State University, Tempe, AZ.
Weilong HaoDepartment of Biological Sciences, Wayne State University, Detroit, MI.
Wayne State University · USUniversity of New Hampshire · USArizona State University · USIndiana University Bloomington · USOcean University of China · CN

Funding

Causes and Population-genetic Consequences of Molecular VariationR35GM122566 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Michael R LYNCH · 2017 to 2026
$7.7M
NIGMS NIH HHS R35 GM122566
6 · The paper itself

Abstract

Mutation and recombination are the primary sources of genetic variation. To better understand the evolution of genetic variation, it is crucial to comprehensively investigate the processes involving mutation accumulation and recombination. In this study, we performed mutation accumulation experiments on four heterozygous diploid yeast species in the Saccharomycodaceae family to determine spontaneous mutation rates, mutation spectra, and losses of heterozygosity (LOH). We observed substantial variation in mutation rates and mutation spectra. We also observed high LOH rates (1.65-11.07×10-6 events per heterozygous site per cell division). Biases in spontaneous mutation and LOH together with selection ultimately shape the variable genome-wide nucleotide landscape in yeast species.

Indexed as

Genome, FungalLoss of HeterozygosityMutation RateHanseniasporaMutation Accumulationbase substitutionsdiploid genomeGC contentLOHmutational spectrummutation rate

Identifiers

PMID33219379
PMCPMC7825102
OpenAlexW3036493959

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.