Evidence map›Paper›PMID 33219233›Full record

ArticleNature communications2020

Subnuclear gene positioning through lamina association affects copper tolerance.

Yuki Sakamoto, Mayuko Sato, Yoshikatsu Sato, Akihito Harada, Takamasa Suzuki, Chieko Goto, Kentaro Tamura, Kiminori Toyooka, Hiroshi Kimura, Yasuyuki Ohkawa and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. SCFScience advances · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 1 country.

Yuki SakamotoImaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan.
Mayuko SatoRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.
Yoshikatsu SatoInstitute of Transformative Bio-Molecules, Nagoya University, Chikusa, Nagoya, 464-8601, Japan.ORCID 0000-0002-4967-2698
Akihito HaradaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi, Fukuoka, 812-0054, Japan.
Takamasa SuzukiCollege of Bioscience and Biotechnology, Chubu University, Kasugai, 487-8501, Japan.ORCID 0000-0002-1977-0510
Chieko GotoGraduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.
Kentaro TamuraSchool of Food and Nutritional Sciences, University of Shizuoka, Shizuoka, 422-8526, Japan.
Kiminori ToyookaRIKEN Center for Sustainable Resource Science, Yokohama, 230-0045, Japan.ORCID 0000-0002-6414-5191
Hiroshi KimuraGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, 226-8501, Japan.ORCID 0000-0003-0854-083X
Yasuyuki OhkawaDivision of Transcriptomics, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi, Fukuoka, 812-0054, Japan.ORCID 0000-0001-6440-9954
Ikuko Hara-NishimuraFaculty of Science and Engineering, Konan University, Kobe, 658-8501, Japan.ORCID 0000-0001-8814-1593
Shingo TakagiDepartment of Biological Sciences, Graduate School of Science, Osaka University, 1-1 Machikaneyama-cho, Toyonaka, Osaka, 560-0043, Japan.
Sachihiro MatsunagaImaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan. sachi@edu.k.u-tokyo.ac.jp.
Kyushu University · JPRIKEN Center for Sustainable Resource Science · JPTokyo University of Science · JPChubu University · JPKobe University · JPKonan University · JPNagoya University · JPThe University of Osaka · JPTokyo Institute of Technology · JPUniversity of Shizuoka · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear lamina plays an important role in the regulation of chromatin organization and gene positioning in animals. CROWDED NUCLEI (CRWN) is a strong candidate for the plant nuclear lamina protein in Arabidopsis thaliana but its biological function was largely unknown. Here, we show that CRWNs localize at the nuclear lamina and build the meshwork structure. Fluorescence in situ hybridization and RNA-seq analyses revealed that CRWNs regulate chromatin distribution and gene expression. More than 2000 differentially expressed genes were identified in the crwn1crwn4 double mutant. Copper-associated (CA) genes that form a gene cluster on chromosome 5 were among the downregulated genes in the double mutant exhibiting low tolerance to excess copper. Our analyses showed this low tolerance to copper was associated with the suppression of CA gene expression and that CRWN1 interacts with the CA gene locus, enabling the locus to localize at the nuclear lamina under excess copper conditions.

Indexed as

Arabidopsis ProteinsNuclear LaminaNuclear ProteinsArabidopsisCell NucleusChromatinCopperGene Expression Regulation, PlantIn Situ Hybridization, FluorescenceMutationPlant ProteinsRNA-SeqArabidopsis ProteinsAt1g13220 protein, ArabidopsisAt1g67230 protein, ArabidopsisChromatinCopperNuclear ProteinsPlant Proteins

Identifiers

PMID33219233
PMCPMC7679404
OpenAlexW3101126517

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.